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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Bagneris, C."

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Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Magnetococcus marinus MC-1 (19)
	Human gammaherpesvirus 8 (7)
	Homo sapiens (6)
	Human herpesvirus 8 type M (2)
	Mycobacterium tuberculosis (2)
	Rhodotorula graminis (2)
	Staphylococcus aureus (2)
	Bacillus phage VMY22 (1)
	Bacillus phage vB_BpuM-BpSp (1)
	Bacillus subtilis (1)

More...

Taxonomy

	Bacteria (26)
	Duplodnaviria (10)
	Eukaryota (9)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (39)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (40)
	DNA (3)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (2)
	2.0 - 2.5 (4)
	2.5 - 3.0 (16)
	3.0 - 3.5 (13)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (19)
	2015 - 2019 (11)
	2020 - 2024 (4)

Enzyme Classification Name

Hydrolases (9)

Membrane Protein Annotation

	PDBTM (19)
	MemProtMD (18)
	mpstruc (16)
	OPM (3)

Symmetry Type

	Cyclic (27)
	Asymmetric (13)

SCOP Classification

Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 40 Structures

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1XSF \| pdb_00001xsf	Download File View File

Solution structure of a resuscitation promoting factor domain from Mycobacterium tuberculosis

Cohen-Gonsaud, M., Barthe, P., Henderson, B., Ward, J., Roumestand, C., Keep, N.H.

(2005) Nat Struct Mol Biol 12: 270-273

Released	2005-02-15
Method	SOLUTION NMR
Organisms	Mycobacterium tuberculosis
Macromolecule	Probable resuscitation-promoting factor rpfB (protein)

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2W2K \| pdb_00002w2k	Download File View File

Crystal structure of the apo forms of Rhodotorula graminis D- mandelate dehydrogenase at 1.8A.

Vachieri, S.G., Cole, A.R., Bagneris, C., Baker, D.P., Fewson, C.A., Basak, A.K.

To be published

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rhodotorula graminis
Macromolecule	D-MANDELATE DEHYDROGENASE (protein)

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2W2L \| pdb_00002w2l	Download File View File

Crystal structure of the holo forms of Rhodotorula graminis D- mandelate dehydrogenase at 2.5A.

Vachieri, S.G., Cole, A.R., Bagneris, C., Baker, D.P., Fewson, C.A., Basak, A.K.

To be published

Released	2009-11-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rhodotorula graminis
Macromolecule	D-MANDELATE DEHYDROGENASE (protein)
Unique Ligands	NAD, SO4

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2WJ5 \| pdb_00002wj5	Download File View File

Rat alpha crystallin domain

Naylor, C.E., Bagneris, C., Bateman, O.A., Cronin, N., Keep, N.H., Slingsby, C.

(2009) J Mol Biology 392: 1242

Released	2009-08-11
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Rattus norvegicus
Macromolecule	HEAT SHOCK PROTEIN BETA-6 (protein)

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2WJ7 \| pdb_00002wj7	Download File View File

human alphaB crystallin

Naylor, C.E., Bagneris, C., Bateman, O.A., Cronin, N., Keep, N.H., Slingsby, C.

(2009) J Mol Biology 392: 1242

Released	2009-08-11
Method	X-RAY DIFFRACTION 2.631 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-CRYSTALLIN B CHAIN (protein)

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2Y1Y \| pdb_00002y1y	Download File View File

Human alphaB crystallin ACD(residues 71-157)

Naylor, C.E., Bagneris, C., Clark, A.R., Keep, N.H., Slingsby, C.

(2011) J Mol Biology 408: 118

Released	2011-03-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-CRYSTALLIN B CHAIN, (protein)
Unique Ligands	MRD

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2Y1Z \| pdb_00002y1z	Download File View File

Human alphaB Crystallin ACD R120G

Clark, A.R., Bagneris, C., Naylor, C.E., Keep, N.H., Slingsby, C.

(2011) J Mol Biology 408: 118

Released	2011-03-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-CRYSTALLIN B CHAIN (protein)
Unique Ligands	MPD, MRD

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2Y22 \| pdb_00002y22	Download File View File

Human AlphaB-crystallin Domain (residues 67-157)

Naylor, C.E., Bagneris, C., Clark, A.R., Keep, N.H., Slingsby, C.

(2011) J Mol Biology 408: 118

Released	2011-03-02
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-CRYSTALLIN B (protein)

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3CL3 \| pdb_00003cl3	Download File View File

Crystal Structure of a vFLIP-IKKgamma complex: Insights into viral activation of the IKK signalosome

Bagneris, C., Ageichik, A.V., Cronin, N., Boshoff, C., Waksman, G., Barrett, T.

(2008) Mol Cell 30: 620-631

Released	2008-06-17
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Human gammaherpesvirus 8
Macromolecule	NF-kappa-B essential modulator (protein) ORF K13 (protein)

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3POV \| pdb_00003pov	Download File View File

Crystal structure of a SOX-DNA complex

Bagneris, C., Barrett, T.E.

(2011) Nucleic Acids Res 39: 5744-5756

Released	2011-09-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human herpesvirus 8 type M
Macromolecule	ORF 37 (protein) DNA (5'-D(GPGPGPAPTPCPCPTPCPCPCPAPGPTPCPGPAPCPC)-3') (nucleic acid) DNA (5'-D(GPGPTPCPGPAPCPTPAPGPGPAPGPGPAPTPCPCPC)-3') (nucleic acid)
Unique Ligands	FMT, MG

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3V4R \| pdb_00003v4r	Download File View File

Crystal structure of a UvrB dimer-DNA complex

Webster, M.P.J., Jukes, R., Barrett, T.

(2012) Nucleic Acids Res 40: 8743-8758

Released	2012-07-04
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Bacillus subtilis
Macromolecule	UvrABC system protein B (protein) DNA: 5 -TACTGTTT-3 (nucleic acid)
Unique Ligands	ADP

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3ZJZ \| pdb_00003zjz	Download File View File

Open-form NavMS Sodium Channel Pore (with C-terminal Domain)

Bagneris, C., Naylor, C.E., Wallace, B.A.

(2013) Nat Commun 4: 2465

Released	2013-10-02
Method	X-RAY DIFFRACTION 2.92 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	ION TRANSPORT PROTEIN (protein)
Unique Ligands	12P, 2CV, NA

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4CBC \| pdb_00004cbc	Download File View File

Open-form NavMS Sodium Channel Pore (with C-terminal Domain) after thallium soak

Bagneris, C., Naylor, C.E., Wallace, B.A.

(2014) Proc Natl Acad Sci U S A 111: 8428

Released	2014-05-28
Method	X-RAY DIFFRACTION 2.664 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	ION TRANSPORT PROTEIN (protein)
Unique Ligands	2CV, NA

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4F4L \| pdb_00004f4l	Download File View File

Open Channel Conformation of a Voltage Gated Sodium Channel

McCusker, E.C., Bagneris, C., Naylor, C.E., Cole, A.R., D'Avanzo, N., Nichols, C.G., Wallace, B.A.

(2012) Nat Commun 3: 1102-1102

Released	2012-10-03
Method	X-RAY DIFFRACTION 3.49 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	Ion transport protein (protein)

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4OW1 \| pdb_00004ow1	Download File View File

Crystal Structure of Resuscitation Promoting Factor C

Chauviac, F.X., Quay, D.H.X., Cohen-Gonsaud, M., Keep, N.H.

(2014) Acta Crystallogr F Struct Biol Commun 70: 1022-1026

Released	2014-06-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Resuscitation-promoting factor RpfC (protein)
Unique Ligands	EDO

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4OXS \| pdb_00004oxs	Download File View File

Structure of NavMS in complex with channel blocking compound

Naylor, C.E., Bagneris, C., Wallace, B.A.

(2014) Proc Natl Acad Sci U S A 111: 8428-8433

Released	2014-06-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	Ion transport protein (protein)
Unique Ligands	2CV, BR, NA

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4P2Z \| pdb_00004p2z	Download File View File

Structure of NavMS T207A/F214A

Bagneris, C., Naylor, C.E., Wallace, B.A.

(2014) Proc Natl Acad Sci U S A 111: 8428-8433

Released	2014-06-04
Method	X-RAY DIFFRACTION 3.08 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	Ion transport protein (protein)
Unique Ligands	12P, 2CV, NA

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4P30 \| pdb_00004p30	Download File View File

Structure of NavMS mutant in presence of PI1 compound

Bagneris, C., Naylor, C.E., Wallace, B.A.

(2014) Proc Natl Acad Sci U S A 111: 8428-8433

Released	2014-06-04
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	Ion transport protein (protein)
Unique Ligands	12P, 2CV, NA

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4P9O \| pdb_00004p9o	Download File View File

Complex of Voltage-gated ion channel in a the presence of channel blocking compound

Naylor, C.E., Bagneris, C., Wallace, B.A.

(2014) Proc Natl Acad Sci U S A 111: 8428-8433

Released	2014-06-04
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	Ion transport protein (protein)
Unique Ligands	2CV, BR

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4P9P \| pdb_00004p9p	Download File View File

Structure of NavMS in complex with channel blocking compound

Naylor, C.E., Bagneris, C., Wallace, B.A.

(2014) Proc Natl Acad Sci U S A 111: 8428-8433

Released	2014-06-04
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	Ion transport protein (protein)
Unique Ligands	12P, 2CV, BR, NA

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4PA3 \| pdb_00004pa3	Download File View File

Structure of NavMS in complex with channel blocking compound

Naylor, C.E., Bagneris, C., Wallace, B.A.

(2014) Proc Natl Acad Sci U S A 111: 8428-8433

Released	2014-06-04
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	Ion transport protein (protein)
Unique Ligands	12P, 2CV, BR, NA

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4PA4 \| pdb_00004pa4	Download File View File

Structure of NavMS in complex with channel blocking compound

Naylor, C.E., Bagneris, C., Wallace, B.A.

(2014) Proc Natl Acad Sci U S A 111: 8428-8433

Released	2014-06-04
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	Ion transport protein (protein)
Unique Ligands	12P, 2CV, BR, NA

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4PA6 \| pdb_00004pa6	Download File View File

Structure of NavMS pore and C-terminal domain crystallised in the presence of channel blocking compound

Naylor, C.E., Bagneris, C., Wallace, B.A.

(2014) Proc Natl Acad Sci U S A 111: 8428-8433

Released	2014-06-04
Method	X-RAY DIFFRACTION 3.36 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	Ion transport protein (protein)
Unique Ligands	12P, 2CV, NA

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4PA7 \| pdb_00004pa7	Download File View File

Structure of NavMS pore and C-terminal domain crystallised in presence of channel blocking compound

Naylor, C.E., Bagneris, C., Wallace, B.A.

(2014) Proc Natl Acad Sci U S A 111: 8428-8433

Released	2014-06-04
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	Ion transport protein (protein)
Unique Ligands	12P, 2CV, NA

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4PA9 \| pdb_00004pa9	Download File View File

Structure of NavMS in complex with channel blocking compound

Naylor, C.E., Bagneris, C., Wallace, B.A.

(2014) Proc Natl Acad Sci U S A 111: 8428-8433

Released	2014-06-04
Method	X-RAY DIFFRACTION 3.43 Å
Organisms	Magnetococcus marinus MC-1
Macromolecule	Ion transport protein (protein)
Unique Ligands	12P, 2CV, BR

1 to 25 of 40 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1XSF | pdb_00001xsf

2W2K | pdb_00002w2k

2W2L | pdb_00002w2l

2WJ5 | pdb_00002wj5

2WJ7 | pdb_00002wj7

2Y1Y | pdb_00002y1y

2Y1Z | pdb_00002y1z

2Y22 | pdb_00002y22

3CL3 | pdb_00003cl3

3POV | pdb_00003pov

3V4R | pdb_00003v4r

3ZJZ | pdb_00003zjz

4CBC | pdb_00004cbc

4F4L | pdb_00004f4l

4OW1 | pdb_00004ow1

4OXS | pdb_00004oxs

4P2Z | pdb_00004p2z

4P30 | pdb_00004p30

4P9O | pdb_00004p9o

4P9P | pdb_00004p9p

4PA3 | pdb_00004pa3

4PA4 | pdb_00004pa4

4PA6 | pdb_00004pa6

4PA7 | pdb_00004pa7

4PA9 | pdb_00004pa9