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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "DeGrado, W.F."

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Search Summary

This query matches 123 Structures.

Refinements

Structure Determination Methodology

experimental (123)

Scientific Name of Source Organism

	synthetic construct (56)
	Homo sapiens (11)
	Escherichia coli (7)
	Influenza A virus (5)
	Influenza A virus (A/udorn/1972(H3N2)) (4)
	Alkalilimnicola ehrlichii MLHE-1 (3)
	Influenza A virus (A/Hickox/1940(H1N1)) (3)
	Agrobacterium fabrum str. C58 (2)
	Influenza A virus (A/Hong Kong/CUHK43751/2005(H3N2)) (2)
	Influenza A virus (A/Jinfang/132/2002(H3N2)) (2)

More...

Taxonomy

	other sequences (56)
	Riboviria (21)
	Bacteria (15)
	Eukaryota (13)
	Riboviria (RNA viruses and viroids) (3)

Experimental Method

	X-RAY DIFFRACTION (100)
	SOLUTION NMR (20)
	SOLID-STATE NMR (2)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (123)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (17)
	1.5 - 2.0 (30)
	2.0 - 2.5 (17)
	2.5 - 3.0 (21)
	3.0 - 3.5 (5)
	3.5 - 4.0 (7)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (5)
	2000 - 2004 (10)
	2005 - 2009 (8)
	2010 - 2014 (21)
	2015 - 2019 (43)
	2020 - 2024 (33)
	2025 - 2029 (1)

Membrane Protein Annotation

	PDBTM (29)
	OPM (21)
	MemProtMD (20)
	mpstruc (13)

Symmetry Type

	Cyclic (73)
	Asymmetric (42)
	Dihedral (15)

SCOP Classification

	Designed proteins (20)
	All beta proteins (5)
	Peptides (1)
	Alpha and beta proteins (a/b) (2)
	All alpha proteins (1)
	Artifacts (1)

AllSelected

1 to 25 of 123 Structures

Page 1 of 5

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1AL1 \| pdb_00001al1	Download File View File

CRYSTAL STRUCTURE OF ALPHA1: IMPLICATIONS FOR PROTEIN DESIGN

Hill, C.P., Anderson, D.H., Wesson, L., Degrado, W.F., Eisenberg, D.

(1990) Science 249: 543-546

Released	1991-10-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	synthetic construct
Macromolecule	ALPHA HELIX PEPTIDE: ELLKKLLEELKG (protein)
Unique Ligands	SO4

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1BYZ \| pdb_00001byz	Download File View File

DESIGNED PEPTIDE ALPHA-1, P1 FORM

Prive, G.G., Anderson, D.H., Wesson, L., Cascio, D., Eisenberg, D.

(1999) Protein Sci 8: 1400-1409

Released	1998-10-28
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	synthetic construct
Macromolecule	PROTEIN (SYNTHETIC DESIGNED PEPTIDE "ALPHA-1") (protein)
Unique Ligands	CL, ETA, MPD, MRD

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1COI \| pdb_00001coi	Download File View File

DESIGNED TRIMERIC COILED COIL-VALD

Ogihara, N.L., Weiss, M.S., Degrado, W.F., Eisenberg, D.

(1997) Protein Sci 6: 80-88

Released	1997-02-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	synthetic construct
Macromolecule	COIL-VALD (protein)
Unique Ligands	SO4

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1COS \| pdb_00001cos	Download File View File

CRYSTAL STRUCTURE OF A SYNTHETIC TRIPLE-STRANDED ALPHA-HELICAL BUNDLE

Lovejoy, B., Choe, S., Cascio, D., Mcrorie, D.K., Degrado, W., Eisenberg, D.

(1993) Science 259: 1288-1293

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.1 Å
Macromolecule	COILED SERINE (protein)

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1EC5 \| pdb_00001ec5	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL

Geremia, S.

(2000) Proc Natl Acad Sci U S A 97: 6298-6305

Released	2000-07-26
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	PROTEIN (FOUR-HELIX BUNDLE MODEL) (protein)
Unique Ligands	ZN

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1G6U \| pdb_00001g6u	Download File View File

CRYSTAL STRUCTURE OF A DOMAIN SWAPPED DIMER

Ogihara, N.L., Ghirlanda, G., Bryson, J.W., Gingery, M., DeGrado, W.F., Eisenberg, D.

(2001) Proc Natl Acad Sci U S A 98: 1404-1409

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.48 Å
Macromolecule	DOMAIN SWAPPED DIMER (protein)
Unique Ligands	SO4, TFA

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1JM0 \| pdb_00001jm0	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL

Di Costanzo, L., Geremia, S.

(2001) J Am Chem Soc 123: 12749-12757

Released	2002-01-16
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	PROTEIN (FOUR-HELIX BUNDLE MODEL) (protein)
Unique Ligands	DMS, MN

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1JMB \| pdb_00001jmb	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL

Di Costanzo, L., Geremia, S.

(2001) J Am Chem Soc 123: 12749-12757

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	PROTEIN (FOUR-HELIX BUNDLE MODEL) (protein)
Unique Ligands	DMS, MN

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1LT1 \| pdb_00001lt1	Download File View File

SLIDING HELIX INDUCED CHANGE OF COORDINATION GEOMETRY IN A MODEL DI-MN(II) PROTEIN

Di Costanzo, L., Geremia, S.

(2003) Angew Chem Int Ed Engl 42: 417-420

Released	2003-05-20
Method	X-RAY DIFFRACTION 1.91 Å
Macromolecule	L13G-DF1 (protein)
Unique Ligands	MN

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1MFT \| pdb_00001mft	Download File View File

Crystal Structure Of Four-Helix Bundle Model

Lahr, S.J., Stayrook, S.E., North, B., Kaplan, J., Geremia, S., DeGrado, W.

(2005) J Mol Biology 346: 1441-1454

Released	2004-01-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Four-helix bundle model (protein)
Unique Ligands	ZN

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1NVO \| pdb_00001nvo	Download File View File

Solution structure of a four-helix bundle model, apo-DF1

Maglio, O., Nastri, F., Pavone, V., Lombardi, A., DeGrado, W.F.

(2003) Proc Natl Acad Sci U S A 100: 3772-3777

Released	2003-03-25
Method	SOLUTION NMR
Macromolecule	Homodimeric Alpha2 Four-Helix Bundle (protein)

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1OVR \| pdb_00001ovr	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Mn(II)-DF1-L13

Di Costanzo, L., Geremia, S.

(2005) J Am Chem Soc 127: 17266-17276

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.99 Å
Macromolecule	four-helix bundle model di-Mn(II)-DF1-L13 (protein)
Unique Ligands	MN

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1OVU \| pdb_00001ovu	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form I)

Di Costanzo, L., Geremia, S.

(2005) J Am Chem Soc 127: 17266-17276

Released	2004-04-06
Method	X-RAY DIFFRACTION 3.1 Å
Macromolecule	four-helix bundle model di-Co(II)-DF1-L13A (form I) (protein)
Unique Ligands	CO

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1OVV \| pdb_00001ovv	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form II)

Di Costanzo, L., Geremia, S.

(2005) J Am Chem Soc 127: 17266-17276

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.9 Å
Macromolecule	FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form II) (protein)
Unique Ligands	CO

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1QP6 \| pdb_00001qp6	Download File View File

SOLUTION STRUCTURE OF ALPHA2D

Hill, R.B., DeGrado, W.F.

(1998) J Am Chem Soc 120: 1138-1145

Released	1999-06-09
Method	SOLUTION NMR
Macromolecule	PROTEIN (ALPHA2D) (protein)

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1U7J \| pdb_00001u7j	Download File View File

Solution structure of a diiron protein model

Maglio, O., Nastri, F., Calhoun, J.R., Lahr, S., Pavone, V., DeGrado, W.F., Lombardi, A.

(2005) J Mol Biology 346: 1441-1454

Released	2005-03-01
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Four-helix bundle model (protein)
Unique Ligands	ZN

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1U7M \| pdb_00001u7m	Download File View File

Solution structure of a diiron protein model: Due Ferri(II) turn mutant

Maglio, O., Nastri, F., Calhoun, J.R., Lahr, S., Pavone, V., DeGrado, W.F., Lombardi, A.

(2005) J Mol Biology 346: 1441-1454

Released	2005-03-01
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Four-helix bundle model (protein)
Unique Ligands	ZN

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1Y47 \| pdb_00001y47	Download File View File

Structural studies of designed alpha-helical hairpins

Lahr, S.J., Engel, D.E., Stayrook, S.E., Maglio, O., North, B., Geremia, S., Lombardi, A., DeGrado, W.F.

(2005) J Mol Biology 346: 1441-1454

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.7 Å
Macromolecule	dueferri (DF2) (protein)
Unique Ligands	CD

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1YOD \| pdb_00001yod	Download File View File

Crystal structure of a water soluble analog of phospholamban

Slovic, A.M., Stayrook, S.E., North, B., DeGrado, W.F.

(2005) J Mol Biology 348: 777-787

Released	2005-04-19
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	water-solublized phospholamban (protein)

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2A3D \| pdb_00002a3d	Download File View File

SOLUTION STRUCTURE OF A DE NOVO DESIGNED SINGLE CHAIN THREE-HELIX BUNDLE (A3D)

Walsh, S.T.R., Cheng, H., Bryson, J.W., Roder, H., Degrado, W.F.

(1999) Proc Natl Acad Sci U S A 96: 5486-5491

Released	1999-05-05
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	PROTEIN (DE NOVO THREE-HELIX BUNDLE) (protein)

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2HZ8 \| pdb_00002hz8	Download File View File

QM/MM structure refined from NMR-structure of a single chain diiron protein

Calhoun, J.R., Liu, W., Spiegel, K., Dal Peraro, M., Klein, M.L., Wand, A.J., DeGrado, W.F.

(2008) Structure 16: 210-215

Released	2007-07-17
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	De novo designed diiron protein (protein)
Unique Ligands	ZN

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2KIK \| pdb_00002kik	Download File View File

An artificial di-iron oxo-protein with phenol oxidase activity

Maglio, O., Lombardi, A.

To be published

Released	2009-11-10
Method	SOLUTION NMR
Macromolecule	Artificial diiron protein (protein)
Unique Ligands	ZN

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2KQT \| pdb_00002kqt	Download File View File

Solid-state NMR structure of the M2 transmembrane peptide of the influenza A virus in DMPC lipid bilayers bound to deuterated amantadine

Cady, S.D., Schmidt-Rohr, K., Wang, J., Soto, C.S., DeGrado, W.F., Hong, M.

(2010) Nature 463: 689-692

Released	2010-02-09
Method	SOLID-STATE NMR
Organisms	Influenza A virus (strain A/Hong Kong/156/1997 H5N1 genotype Gs/Gd)
Macromolecule	M2 protein (protein)
Unique Ligands	308