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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "DesJarlais, R.L."

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Search Summary

This query matches 35 Structures.

Refinements

Structure Determination Methodology

experimental (35)

Scientific Name of Source Organism

	Homo sapiens (26)
	Human immunodeficiency virus 1 (4)
	Carica papaya (2)
	Gallus gallus (1)
	Human immunodeficiency virus type 1 BH10 (1)
	Simian immunodeficiency virus (1)

Taxonomy

	Eukaryota (29)
	Riboviria (6)

Experimental Method

X-RAY DIFFRACTION (35)

Polymer Entity Type

Protein (35)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (10)
	2.0 - 2.5 (15)
	2.5 - 3.0 (7)
	3.0 - 3.5 (1)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (13)
	2005 - 2009 (3)
	2010 - 2014 (3)
	2020 - 2024 (13)

Enzyme Classification Name

	Hydrolases (24)
	Transferases (6)

Membrane Protein Annotation

	OPM (2)
	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (27)
	Cyclic (8)

SCOP Classification

	All beta proteins (9)
	Alpha and beta proteins (a+b) (16)
	All alpha proteins (2)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 35 Structures

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1AU0 \| pdb_00001au0	Download File View File

CRYSTAL STRUCTURE OF THE CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT SYMMETRIC DIACYLAMINOMETHYL KETONE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1997) J Am Chem Soc 119: 11351-11352

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	SDK

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1AU2 \| pdb_00001au2	Download File View File

CRYSTAL STRUCTURE OF THE CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT PROPANONE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1997) J Am Chem Soc 119: 11351-11352

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	POS

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1AU3 \| pdb_00001au3	Download File View File

CRYSTAL STRUCTURE OF THE CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT PYRROLIDINONE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1998) J Med Chem 41: 3563-3567

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	PCM

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1AU4 \| pdb_00001au4	Download File View File

CRYSTAL STRUCTURE OF THE CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT PYRROLIDINONE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1998) J Med Chem 41: 3563-3567

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	INP

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1AYU \| pdb_00001ayu	Download File View File

CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT SYMMETRIC BISCARBOHYDRAZIDE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1997) Proc Natl Acad Sci U S A 94: 14249-14254

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	INA

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1AYV \| pdb_00001ayv	Download File View File

CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT THIAZOLHYDRAZIDE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1997) Proc Natl Acad Sci U S A 94: 14249-14254

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	IN6

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1AYW \| pdb_00001ayw	Download File View File

CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT BENZYLOXYBENZOYLCARBOHYDRAZIDE INHIBITOR

Zhao, B., Smith, W.W., Janson, C.A., Abdel-Meguid, S.S.

(1997) Proc Natl Acad Sci U S A 94: 14249-14254

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	IN3

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1BGO \| pdb_00001bgo	Download File View File

CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT PEPTIDOMIMETIC INHIBITOR

Desjarlais, R.L., Yamashita, D.S., Oh, H.-J., Bondinell, W.E., Uzinskas, I.N., Erhard, K.F., Allen, A.C., Haltiwanger, R.C., Zhao, B., Smith, W.W., Abdel-Meguid, S.S., D'Alessio, K., Janson, C.A., Mcqueney, M.S., Tomaszek, T.A., Levy, M.A., Veber, D.F.

(1998) J Am Chem Soc 120: 9114

Released	1999-06-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CATHEPSIN K (protein)
Unique Ligands	I10

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1BP4 \| pdb_00001bp4	Download File View File

USE OF PAPAIN AS A MODEL FOR THE STRUCTURE-BASED DESIGN OF CATHEPSIN K INHIBITORS. CRYSTAL STRUCTURES OF TWO PAPAIN INHIBITOR COMPLEXES DEMONSTRATE BINDING TO S'-SUBSITES.

Lalonde, J.M., Zhao, B., Smith, W.W., Janson, C.A., Desjarlais, R.L., Tomaszek, T.A., Carr, T.J., Thompson, S.K., Yamashita, D.S., Veber, D.F., Abdel-Mequid, S.S.

(1998) J Med Chem 41: 4567-4576

Released	1999-08-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Carica papaya
Macromolecule	PAPAIN (protein)
Unique Ligands	ALD

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1BQI \| pdb_00001bqi	Download File View File

USE OF PAPAIN AS A MODEL FOR THE STRUCTURE-BASED DESIGN OF CATHEPSIN K INHIBITORS. CRYSTAL STRUCTURES OF TWO PAPAIN INHIBITOR COMPLEXES DEMONSTRATE BINDING TO S'-SUBSITES.

Lalonde, J.M., Zhao, B., Smith, W.W., Janson, C.A., Desjarlais, R.L., Tomaszek, T.A., Carr, T.J., Thompson, S.K., Yamashita, D.S., Veber, D.F., Abdel-Mequid, S.S.

(1998) J Med Chem 41: 4567-4576

Released	1999-08-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Carica papaya
Macromolecule	PAPAIN (protein)
Unique Ligands	SBA

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1HBV \| pdb_00001hbv	Download File View File

A CHECK ON RATIONAL DRUG DESIGN. CRYSTAL STRUCTURE OF A COMPLEX OF HIV-1 PROTEASE WITH A NOVEL GAMMA-TURN MIMETIC

Hoog, S., Abdel-Meguid, S.

(1995) J Med Chem 38: 3246-3252

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	GAN

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1HOS \| pdb_00001hos	Download File View File

INHIBITION OF HUMAN IMMUNODEFICIENCY VIRUS-1 PROTEASE BY A C2-SYMMETRIC PHOSPHINATE SYNTHESIS AND CRYSTALLOGRAPHIC ANALYSIS

Abdel-Meguid, S., Zhao, B.

(1993) Biochemistry 32: 7972-7980

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	PHP

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1HPS \| pdb_00001hps	Download File View File

RATIONAL DESIGN, SYNTHESIS AND CRYSTALLOGRAPHIC ANALYSIS OF A HYDROXYETHYLENE-BASED HIV-1 PROTEASE INHIBITOR CONTAINING A HETEROCYCLIC P1'-P2' AMIDE BOND ISOSTERE

Abdel-Meguid, S., Zhao, B.

(1994) J Med Chem 37: 3100-3107

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	RUN

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1SBG \| pdb_00001sbg	Download File View File

AN ORALLY-BIOAVAILABLE HIV-1 PROTEASE INHIBITOR CONTAINING AN IMIDAZOLE-DERIVED PEPTIDE BOND REPLACEMENT. CRYSTALLOGRAPHIC AND PHARMACOKINETIC ANALYSIS

Abdel-Meguid, S., Zhao, B.

(1994) Biochemistry 33: 11671-11677

Released	1994-10-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus type 1 BH10
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	IM1

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1TCW \| pdb_00001tcw	Download File View File

SIV PROTEASE COMPLEXED WITH INHIBITOR SB203386

Hoog, S.S., Abdel-Meguid, S.S.

(1996) Biochemistry 35: 10279-10286

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Simian immunodeficiency virus
Macromolecule	SIV PROTEASE (protein)
Unique Ligands	IM1

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1TCX \| pdb_00001tcx	Download File View File

HIV TRIPLE MUTANT PROTEASE COMPLEXED WITH INHIBITOR SB203386

Hoog, S.S., Abdel-Meguid, S.S.

(1996) Biochemistry 35: 10279-10286

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV PROTEASE (protein)
Unique Ligands	IM1

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2AJL \| pdb_00002ajl	Download File View File

X-ray Structure of Novel Biaryl-Based Dipeptidyl peptidase IV inhibitor

Qiao, L., Baumann, C.A., Crysler, C.S., Ninan, N.S., Abad, M.C., Spurlino, J.C., DesJarlais, R.L., Kervinen, J., Neeper, M.P., Bayoumy, S.S.

(2006) Bioorg Med Chem Lett 16: 123-128

Released	2005-11-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	JNH, NAG

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3BEA \| pdb_00003bea	Download File View File

cFMS tyrosine kinase (tie2 KID) in complex with a pyrimidinopyridone inhibitor

Schubert, C.

(2008) Bioorg Med Chem Lett 18: 2355-2361

Released	2008-07-15
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Macrophage colony-stimulating factor 1 receptor (protein)
Unique Ligands	IXH, SO4

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3DPK \| pdb_00003dpk	Download File View File

cFMS tyrosine kinase in complex with a pyridopyrimidinone inhibitor

Schubert, C.

(2009) J Med Chem 52: 1081-1099

Released	2009-02-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Macrophage colony-stimulating factor 1 receptor, Fibroblast growth factor receptor 1 (protein)
Unique Ligands	8C5, SO4

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3KRJ \| pdb_00003krj	Download File View File

cFMS tyrosine kinase in complex with 4-Cyano-1H-imidazole-2-carboxylic acid (2-cyclohex-1-enyl-4-piperidin-4-yl-phenyl)-amide

Schubert, C.

(2011) J Med Chem 54: 7860-7883

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Macrophage colony-stimulating factor 1 receptor, Basic fibroblast growth factor receptor 1 (protein)
Unique Ligands	ACT, KRJ

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3KRL \| pdb_00003krl	Download File View File

cFMS Tyrosine kinase in complex with 5-Cyano-furan-2-carboxylic acid [4-(4-methyl-piperazin-1-yl)-2-piperidin-1-yl-phenyl]-amide

Schubert, C.

(2011) J Med Chem 54: 7860-7883

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Macrophage colony-stimulating factor 1 receptor, Basic fibroblast growth factor receptor 1 (protein)
Unique Ligands	KRL, SO4

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3PE6 \| pdb_00003pe6	Download File View File

Crystal Structure of a soluble form of human MGLL in complex with an inhibitor

Schubert, C., Schalk-Hih, C.

(2011) Protein Sci 20: 670-683

Released	2011-03-02
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Monoglyceride lipase (protein)
Unique Ligands	ZYH

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6X9H \| pdb_00006x9h	Download File View File

Molecular mechanism and structural basis of small-molecule modulation of acid-sensing ion channel 1 (ASIC1)

Liu, Y., Ma, J., DesJarlais, R.L., Hagan, R., Rech, J., Lin, D., Liu, C., Miller, R., Schoellerman, J., Luo, J., Letavic, M., Grasberger, B., Maher, M.

(2021) Commun Biol 4: 174-174

Released	2020-12-30
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Gallus gallus
Macromolecule	Acid-sensing ion channel 1 (protein)
Unique Ligands	NA, NAG, UZG

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7K7L \| pdb_00007k7l	Download File View File

Structure of a hit for G Protein Coupled Receptor Kinase 2 (GRK2) Inhibitor for the Potential Treatment of Heart Failure

Spurlino, J.C., Milligan, C.

(2020) Bioorg Med Chem Lett 30: 127602-127602

Released	2020-10-28
Method	X-RAY DIFFRACTION 2.539 Å
Organisms	Homo sapiens
Macromolecule	Beta-adrenergic receptor kinase 1 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein)
Unique Ligands	MG, W4D

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7K7Z \| pdb_00007k7z	Download File View File

Structure of a hit for G Protein Coupled Receptor Kinase 2 (GRK2) Inhibitor for the Potential Treatment of Heart Failure

Spurlino, J.C., Milligan, C.

(2020) Bioorg Med Chem Lett 30: 127602-127602

Released	2020-10-28
Method	X-RAY DIFFRACTION 2.60608692764 Å
Organisms	Homo sapiens
Macromolecule	Beta-adrenergic receptor kinase 1 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein)
Unique Ligands	W4G

1 to 25 of 35 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AU0 | pdb_00001au0

1AU2 | pdb_00001au2

1AU3 | pdb_00001au3

1AU4 | pdb_00001au4

1AYU | pdb_00001ayu

1AYV | pdb_00001ayv

1AYW | pdb_00001ayw

1BGO | pdb_00001bgo

1BP4 | pdb_00001bp4

1BQI | pdb_00001bqi

1HBV | pdb_00001hbv

1HOS | pdb_00001hos

1HPS | pdb_00001hps

1SBG | pdb_00001sbg

1TCW | pdb_00001tcw

1TCX | pdb_00001tcx

2AJL | pdb_00002ajl

3BEA | pdb_00003bea

3DPK | pdb_00003dpk

3KRJ | pdb_00003krj

3KRL | pdb_00003krl

3PE6 | pdb_00003pe6

6X9H | pdb_00006x9h

7K7L | pdb_00007k7l

7K7Z | pdb_00007k7z