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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Fan, Y."

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Search Summary

This query matches 128 Structures.

Refinements

Structure Determination Methodology

experimental (128)

Scientific Name of Source Organism

	Homo sapiens (61)
	Thermochaetoides thermophila DSM 1495 (13)
	Bacillus anthracis str. Sterne (9)
	Severe acute respiratory syndrome coronavirus 2 (6)
	Aspergillus oryzae (3)
	Thermochaetoides thermophila (3)
	Discosoma sp. (2)
	Escherichia coli K-12 (2)
	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (2)
	Arabidopsis thaliana (1)

More...

Taxonomy

	Eukaryota (85)
	Bacteria (37)
	Riboviria (8)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (104)
	ELECTRON MICROSCOPY (24)

Polymer Entity Type

	Protein (126)
	RNA (2)
	DNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (11)
	1.5 - 2.0 (38)
	2.0 - 2.5 (28)
	2.5 - 3.0 (22)
	3.0 - 3.5 (21)
	3.5 - 4.0 (2)
	4.0 - 4.5 (5)

Release Date

	2005 - 2009 (13)
	2010 - 2014 (30)
	2015 - 2019 (34)
	2020 - 2024 (51)

Enzyme Classification Name

	Hydrolases (23)
	Transferases (25)
	Oxidoreductases (7)
	Lyases (5)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (3)
	MemProtMD (2)
	OPM (1)

Symmetry Type

	Asymmetric (78)
	Cyclic (49)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a+b) (27)
	Artifacts (20)
	All alpha proteins (8)
	All beta proteins (5)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 128 Structures

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2Q1O \| pdb_00002q1o	Download File View File

Crystal Structure Analysis of the RNA Dodecamer CGC-NF2-AAUUGGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2)

Li, F., Pallan, P.S.

(2007) Nucleic Acids Res 35: 6424-6438

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.1 Å
Macromolecule	RNA (5'-R(CPGPCP(NF2)PAPAPUPUPGPGPCPG)-3') (nucleic acid)

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2Q1R \| pdb_00002q1r	Download File View File

Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch.

Li, F., Pallan, P.S.

(2007) Nucleic Acids Res 35: 6424-6438

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.12 Å
Macromolecule	RNA (5'-R(CPGPCPGPAPAPUPUPAPGPCPG)-3') (nucleic acid)
Unique Ligands	MG

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2QD9 \| pdb_00002qd9	Download File View File

P38 Alpha Map Kinase inhibitor based on heterobicyclic scaffolds

Sack, J.S.

(2007) Bioorg Med Chem Lett 17: 5019-5024

Released	2007-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	LGF

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3GBY \| pdb_00003gby	Download File View File

Crystal structure of a protein with unknown function CT1051 from Chlorobium tepidum

Fan, Y., Chang, C., Sather, A., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-03-17
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Chlorobaculum tepidum TLS
Macromolecule	Uncharacterized protein CT1051 (protein)
Unique Ligands	EPE, SO4

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3GFV \| pdb_00003gfv	Download File View File

Crystal Structure of Petrobactin-binding Protein YclQ from Bacillu subtilis

Kim, Y., Maltseva, N., Zawadzka, A.M., Raymond, K.N., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2009) Proc Natl Acad Sci U S A 106: 21854-21859

Released	2009-05-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Uncharacterized ABC transporter solute-binding protein yclQ (protein)
Unique Ligands	ASN, PO4

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3GYK \| pdb_00003gyk	Download File View File

The crystal structure of a thioredoxin-like oxidoreductase from Silicibacter pomeroyi DSS-3

Fan, Y., Marshall, N., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-06-09
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Ruegeria pomeroyi DSS-3
Macromolecule	27kDa outer membrane protein (protein)
Unique Ligands	EDO, SO4

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3I3T \| pdb_00003i3t	Download File View File

Crystal structure of covalent ubiquitin-USP21 complex

Neculai, D., Avvakumov, G.V., Walker, J.R., Xue, S., Butler-Cole, C., Weigelt, J., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2013) Science 339: 590-595

Released	2009-07-21
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein) Ubiquitin carboxyl-terminal hydrolase 21 (protein)
Unique Ligands	NEH, ZN

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3IC1 \| pdb_00003ic1	Download File View File

Crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase from Haemophilus influenzae

Nocek, B.P., Gillner, D.M., Holz, R.C., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2010) J Mol Biology 397: 617-626

Released	2009-09-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Haemophilus influenzae
Macromolecule	Succinyl-diaminopimelate desuccinylase (protein)
Unique Ligands	GOL, SO4, ZN

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3ICA \| pdb_00003ica	Download File View File

The crystal structure of the beta subunit of a phenylalanyl-tRNA synthetase from Porphyromonas gingivalis W83

Fan, Y., Sather, A., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Porphyromonas gingivalis
Macromolecule	Phenylalanyl-tRNA synthetase beta chain (protein)
Unique Ligands	GOL, TAM

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3ISZ \| pdb_00003isz	Download File View File

Crystal structure of mono-zinc form of succinyl-diaminopimelate desuccinylase from Haemophilus influenzae

Nocek, B.P., Gillner, D.M., Holz, R.C., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2010) J Mol Biology 397: 617-626

Released	2009-11-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Haemophilus influenzae Rd KW20
Macromolecule	Succinyl-diaminopimelate desuccinylase (protein)
Unique Ligands	SO4, ZN

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3IV4 \| pdb_00003iv4	Download File View File

A putative oxidoreductase with a thioredoxin fold

Fan, Y., Xu, X., Cui, H., Ng, J., Savchenko, A., Joachimiak, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-09-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	Putative oxidoreductase (protein)

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3JRK \| pdb_00003jrk	Download File View File

A putative tagatose 1,6-diphosphate aldolase from Streptococcus pyogenes

Fan, Y., Volkart, L., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-09-22
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Streptococcus pyogenes serotype M1
Macromolecule	Tagatose 1,6-diphosphate aldolase 2 (protein)
Unique Ligands	GOL

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3JYF \| pdb_00003jyf	Download File View File

The crystal structure of a 2,3-cyclic nucleotide 2-phosphodiesterase/3-nucleotidase bifunctional periplasmic precursor protein from Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Fan, Y., Volkart, L., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2009-09-29
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic protein (protein)
Unique Ligands	EPE, GOL, MN, SO4, TAM

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3K3Q \| pdb_00003k3q	Download File View File

Crystal Structure of a Llama Antibody complexed with the C. Botulinum Neurotoxin Serotype A Catalytic Domain

Thompson, A.A., Dong, J., Marks, J.D., Stevens, R.C.

(2010) J Mol Biology 397: 1106-1118

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Clostridium botulinum A str. Hall Lama glama
Macromolecule	Botulinum neurotoxin type A (protein) llama Aa1 VHH domain (protein)
Unique Ligands	ZN

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3LHG \| pdb_00003lhg	Download File View File

Bace1 in complex with the aminohydantoin Compound 4g

Olland, A.M.

(2010) Bioorg Med Chem Lett 20: 2326-2329

Released	2010-04-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	Z81

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3MTN \| pdb_00003mtn	Download File View File

Usp21 in complex with a ubiquitin-based, USP21-specific inhibitor

Walker, J.R., Avvakumov, G.V., Xue, S., Li, Y., Ernst, A., Sidhu, S., Weigelt, J., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

(2013) Science 339: 590-595

Released	2010-06-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN VARIANT UBV.21.4 (protein) Ubiquitin carboxyl-terminal hydrolase 21 (protein)
Unique Ligands	CL, GOL, ZN

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3N3K \| pdb_00003n3k	Download File View File

The catalytic domain of USP8 in complex with a USP8 specific inhibitor

Walker, J.R., Avvakumov, G.V., Xue, S., Li, Y., Allali-Hassani, A., Lam, R., Ernst, A., Sidhu, S., Weigelt, J., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium, Structural Genomics Consortium (SGC)

(2013) Science 339: 590-595

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein) Ubiquitin carboxyl-terminal hydrolase 8 (protein)
Unique Ligands	ZN

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3NWG \| pdb_00003nwg	Download File View File

The crystal structure of a microcomparments protein from Desulfitobacterium hafniense DCB

Fan, Y., Volkart, L., Gu, M., Axen, S., Greenleaf, W.B., Kerfeld, C., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Desulfitobacterium hafniense DCB-2
Macromolecule	Microcompartments protein (protein)
Unique Ligands	GOL

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3NWW \| pdb_00003nww	Download File View File

P38 Alpha kinase complexed with a 2-aminothiazol-5-yl-pyrimidine based inhibitor

Sack, J.S.

(2010) Bioorg Med Chem Lett 20: 5864-5868

Released	2010-09-08
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	3NW

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3ON1 \| pdb_00003on1	Download File View File

The structure of a protein with unknown function from Bacillus halodurans C

Fan, Y., Kagan, O., Savchenko, A., Joachimiak, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2010-09-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	BH2414 protein (protein)

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3ON2 \| pdb_00003on2	Download File View File

Structure of a protein with unknown function from Rhodococcus sp. RHA1

Fan, Y., Evdokimova, E., Egorova, O., Savchenko, A., Joachimiak, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2010-09-22
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Rhodococcus jostii RHA1
Macromolecule	Probable transcriptional regulator (protein)
Unique Ligands	PG6, SO4

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3OON \| pdb_00003oon	Download File View File

The structure of an outer membrance protein from Borrelia burgdorferi B31

Fan, Y., Bigelow, L., Feldman, B., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2017) Protein Sci 26: 1738-1748

Released	2010-09-22
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Borreliella burgdorferi B31
Macromolecule	Outer membrane protein (Tpn50) (protein)
Unique Ligands	SO4

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3OOO \| pdb_00003ooo	Download File View File

The structure of a proline dipeptidase from Streptococcus agalactiae 2603V

Fan, Y., Wu, R., Morales, J., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2010-09-22
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Streptococcus agalactiae 2603V/R
Macromolecule	Proline dipeptidase (protein)

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3OOP \| pdb_00003oop	Download File View File

The structure of a protein with unknown function from Listeria innocua Clip11262

Fan, Y., Li, H., Zhou, Y., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2010-09-22
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Listeria innocua Clip11262
Macromolecule	Lin2960 protein (protein)

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3OOS \| pdb_00003oos	Download File View File

The structure of an alpha/beta fold family hydrolase from Bacillus anthracis str. Sterne

Fan, Y., Tan, K., Bigelow, L., Hamilton, J., Li, H., Zhou, Y., Clancy, S., Buck, K., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2010-11-10
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Bacillus anthracis str. Sterne
Macromolecule	Alpha/beta hydrolase family protein (protein)
Unique Ligands	GOL, PG4, SO4

1 to 25 of 128 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2Q1O | pdb_00002q1o

2Q1R | pdb_00002q1r

2QD9 | pdb_00002qd9

3GBY | pdb_00003gby

3GFV | pdb_00003gfv

3GYK | pdb_00003gyk

3I3T | pdb_00003i3t

3IC1 | pdb_00003ic1

3ICA | pdb_00003ica

3ISZ | pdb_00003isz

3IV4 | pdb_00003iv4

3JRK | pdb_00003jrk

3JYF | pdb_00003jyf

3K3Q | pdb_00003k3q

3LHG | pdb_00003lhg

3MTN | pdb_00003mtn

3N3K | pdb_00003n3k

3NWG | pdb_00003nwg

3NWW | pdb_00003nww

3ON1 | pdb_00003on1

3ON2 | pdb_00003on2

3OON | pdb_00003oon

3OOO | pdb_00003ooo

3OOP | pdb_00003oop

3OOS | pdb_00003oos