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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Guevara, T."

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Search Summary

This query matches 61 Structures.

Refinements

Structure Determination Methodology

experimental (61)

Scientific Name of Source Organism

	Tannerella forsythia (13)
	synthetic construct (7)
	Homo sapiens (6)
	Bacteroides fragilis (5)
	Porphyromonas gingivalis (5)
	Porphyromonas gingivalis W83 (5)
	Nepenthes ventricosa x Nepenthes alata (4)
	Staphylococcus aureus subsp. aureus N315 (4)
	Astacus astacus (3)
	Mus musculus (3)

More...

Taxonomy

	Bacteria (39)
	Eukaryota (21)
	other sequences (7)
	Archaea (2)

Experimental Method

X-RAY DIFFRACTION (61)

Polymer Entity Type

Protein (61)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (27)
	2.0 - 2.5 (15)
	2.5 - 3.0 (6)
	3.0 - 3.5 (4)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (12)
	2015 - 2019 (14)
	2020 - 2024 (29)

Enzyme Classification Name

	Hydrolases (29)
	Transferases (1)

Membrane Protein Annotation

mpstruc (2)

Symmetry Type

	Asymmetric (44)
	Cyclic (14)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (2)
	All beta proteins (1)
	Artifacts (1)
	Multi-domain proteins (alpha and beta) (3)
	Small proteins (1)

AllSelected

1 to 25 of 61 Structures

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2IWA \| pdb_00002iwa	Download File View File

Unbound glutaminyl cyclotransferase from Carica papaya.

Guevara, T., Mallorqui-Fernandez, N., Garcia-Castellanos, R., Petersen, G.E., Lauritzen, C., Pedersen, J., Arnau, J., Gomis-Ruth, F.X., Sola, M.

(2006) Biol Chem 387: 1479

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Carica papaya
Macromolecule	GLUTAMINE CYCLOTRANSFERASE (protein)
Unique Ligands	CA, GOL, NAG

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2IWB \| pdb_00002iwb	Download File View File

MecR1 unbound extracellular antibiotic-sensor domain.

Marrero, A., Mallorqui-Fernandez, G., Guevara, T., Garcia-Castellanos, R., Gomis-Ruth, F.X.

(2006) J Mol Biology 361: 506

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Staphylococcus aureus subsp. aureus N315 synthetic construct
Macromolecule	METHICILLIN RESISTANCE MECR1 PROTEIN (protein) TETRAPEPTIDE (protein)
Unique Ligands	GOL, NI

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2IWC \| pdb_00002iwc	Download File View File

Benzylpenicilloyl-acylated MecR1 extracellular antibiotic-sensor domain.

Marrero, A., Mallorqui-Fernandez, G., Guevara, T., Garcia-Castellanos, R., Gomis-Ruth, F.X.

(2006) J Mol Biology 361: 506

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	METHICILLIN RESISTANCE MECR1 PROTEIN (protein)
Unique Ligands	PNM

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2IWD \| pdb_00002iwd	Download File View File

Oxacilloyl-acylated MecR1 extracellular antibiotic-sensor domain.

Marrero, A., Mallorqui-Fernandez, G., Guevara, T., Garcia-Castellanos, R., Gomis-Ruth, F.X.

(2006) J Mol Biology 361: 506

Released	2006-07-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Staphylococcus aureus
Macromolecule	Methicillin resistance mecR1 protein (protein)
Unique Ligands	1S6

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2XS3 \| pdb_00002xs3	Download File View File

Structure of karilysin catalytic MMP domain

Cerda-Costa, N., Guevara, T., Karim, A.Y., Ksiazek, M., Nguyen, K.-A., Arolas, J.L., Potempa, J., Gomis-Ruth, F.X.

(2011) Mol Microbiol 79: 119

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Tannerella forsythia synthetic construct
Macromolecule	KARILYSIN PROTEASE (protein) PEPTIDE ALA-PHE-THR-SER (protein)
Unique Ligands	TRS, ZN

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2XS4 \| pdb_00002xs4	Download File View File

Structure of karilysin catalytic MMP domain in complex with magnesium

Cerda-Costa, N., Guevara, T., Karim, A.Y., Ksiazek, M., Nguyen, K.-A., Arolas, J.L., Potempa, J., Gomis-Ruth, F.X.

(2011) Mol Microbiol 79: 119

Released	2010-11-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Tannerella forsythia synthetic construct
Macromolecule	KARILYSIN PROTEASE (protein) PEPTIDE ALA-PHE-THR (protein)
Unique Ligands	CL, MG, ZN

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3D4U \| pdb_00003d4u	Download File View File

Bovine thrombin-activatable fibrinolysis inhibitor (TAFIa) in complex with tick-derived carboxypeptidase inhibitor.

Sanglas, L., Valnickova, Z., Arolas, J.L., Pallares, I., Guevara, T., Sola, M., Kristensen, T., Enghild, J.J., Aviles, F.X., Gomis-Ruth, F.X.

(2008) Mol Cell 31: 598-606

Released	2008-08-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus Rhipicephalus bursa
Macromolecule	Carboxypeptidase B2 (protein) Carboxypeptidase inhibitor (protein)
Unique Ligands	ACT, SO4, ZN

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3H8T \| pdb_00003h8t	Download File View File

Structure of Porphyromonas gingivalis heme-binding protein HmuY in complex with Heme

Wojtowicz, H., Guevara, T., Tallant, C., Olczak, M., Sroka, A., Potempa, J., Sola, M., Olczak, T., Gomis-Ruth, F.X.

(2009) PLoS Pathog 5: e1000419-e1000419

Released	2009-05-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Porphyromonas gingivalis
Macromolecule	HmuY (protein)
Unique Ligands	GOL, HEM, SO4

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3LQ0 \| pdb_00003lq0	Download File View File

Zymogen structure of crayfish astacin metallopeptidase

Guevara, T., Yiallouros, I., Kappelhoff, R., Bissdorf, S., Stocker, W., Gomis-Ruth, F.X.

(2010) J Biological Chem 285: 13958-13965

Released	2010-02-23
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Astacus astacus
Macromolecule	ProAstacin (protein)
Unique Ligands	GOL, SO4, ZN

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3MN8 \| pdb_00003mn8	Download File View File

Structure of Drosophila melanogaster carboxypeptidase D isoform 1B short

Tanco, S., Arolas, J.L., Guevara, T., Lorenzo, J., Aviles, F.X., Gomis-Ruth, F.X.

(2010) J Mol Biology 401: 465-477

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Drosophila melanogaster
Macromolecule	LP15968p (protein)
Unique Ligands	GEM, GOL, NAG, ZN

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3OSL \| pdb_00003osl	Download File View File

Structure of bovine thrombin-activatable fibrinolysis inhibitor in complex with tick carboxypeptidase inhibitor

Valnickova, Z., Sanglas, L., Arolas, J.L., Petersen, S.V., Schar, C., Otzen, D., Aviles, F.X., Gomis-Ruth, F.X., Enghild, J.J.

(2010) J Biological Chem 285: 38243-38250

Released	2010-09-29
Method	X-RAY DIFFRACTION 6 Å
Organisms	Bos taurus Rhipicephalus bursa
Macromolecule	Carboxypeptidase B2 (protein) Carboxypeptidase inhibitor (protein)
Unique Ligands	ZN

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3RAM \| pdb_00003ram	Download File View File

Crystal structure of HmrA

Botelho, T., Guevara, T., Marrero, A., Gomis-Ruth, F.X.

(2011) J Biological Chem 286: 25697-25709

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	HmrA protein (protein)
Unique Ligands	GOL, ZN

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4GWM \| pdb_00004gwm	Download File View File

Crystal structure of human promeprin beta

Arolas, J.L., Broder, C., Jefferson, T., Guevara, T., Sterchi, E.E., Bode, W., Stocker, W., Becker-Pauly, C., Gomis-Ruth, F.X.

(2012) Proc Natl Acad Sci U S A 109: 16131-16136

Released	2012-09-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Meprin A subunit beta (protein)
Unique Ligands	CL, GOL, NA, NAG, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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4GWN \| pdb_00004gwn	Download File View File

Crystal structure of human mature meprin beta

Arolas, J.L., Broder, C., Jefferson, T., Guevara, T., Sterchi, E.E., Bode, W., Stocker, W., Becker-Pauly, C., Gomis-Ruth, F.X.

(2012) Proc Natl Acad Sci U S A 109: 16131-16136

Released	2012-09-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Meprin A subunit beta (protein)
Unique Ligands	CD, GOL, NA, NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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4IEF \| pdb_00004ief	Download File View File

Complex of Porphyromonas gingivalis RgpB pro- and mature domains

de Diego, I., Veillard, F.T., Guevara, T., Potempa, B., Sztukowska, M., Potempa, J., Gomis-Ruth, F.X.

(2013) J Biological Chem 288: 14287-14296

Released	2013-04-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Porphyromonas gingivalis W83
Macromolecule	Gingipain R2 Mature Domain (protein) Gingipain R2 Pro-Domain (protein)
Unique Ligands	BA, CA, CL, GOL, MG, NA, TRS

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4IJA \| pdb_00004ija	Download File View File

Structure of S. aureus methicillin resistance factor MecR2

Arede, P., Botelho, T., Guevara, T., Uson, I., Oliveira, D.C., Gomis-Ruth, F.X.

(2013) J Biological Chem 288: 21267-21278

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	XylR protein (protein)
Unique Ligands	GOL, K, PO4

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4IN9 \| pdb_00004in9	Download File View File

Structure of karilysin MMP-like catalytic domain in complex with inhibitory tetrapeptide SWFP

Guevara, T., Ksiazek, M., Skottrup, P.D., Cerda-Costa, N., Trillo-Muyo, S., de Diego, I., Riise, E., Potempa, J., Gomis-Ruth, F.X.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 472-476

Released	2013-05-15
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Tannerella forsythia synthetic construct
Macromolecule	Karilysin protease (protein) Peptide SER-TRP-PHE-PRO (protein)
Unique Ligands	GOL, K, NA, ZN

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4R3V \| pdb_00004r3v	Download File View File

Structure of karilysin propeptide and catalytic MMP domain

Lopez-Pelegrin, M., Ksiazek, M., Karim, A.Y., Guevara, T., Arolas, J.L., Potempa, J., Gomis-Ruth, F.X.

(2015) J Biological Chem 290: 4728-4740

Released	2015-01-07
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Tannerella forsythia 92A2
Macromolecule	Karilysin (protein)
Unique Ligands	CA, GOL, ZN

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4RBM \| pdb_00004rbm	Download File View File

Porphyromonas gingivalis gingipain K (Kgp) catalytic and immunoglobulin superfamily-like domains

de Diego, I., Veillard, F., Sztukowska, M.N., Guevara, T., Potempa, B., Pomowski, A., Huntington, J.A., Potempa, J., Gomis-Ruth, F.X.

(2014) J Biological Chem 289: 32291-32302

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Porphyromonas gingivalis
Macromolecule	Lys-gingipain W83 (protein)
Unique Ligands	ACT, AZI, CA, CKC, GOL, HIS, NA, NI

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4YT9 \| pdb_00004yt9	Download File View File

Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) substrate-unbound.

Goulas, T., Mizgalska, D., Garcia-Ferrer, I., Kantyka, T., Guevara, T., Szmigielski, B., Sroka, A., Millan, C., Uson, I., Veillard, F., Potempa, B., Mydel, P., Sola, M., Potempa, J., Gomis-Ruth, F.X.

(2015) Sci Rep 5: 11969-11969

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Porphyromonas gingivalis W83
Macromolecule	Peptidylarginine deiminase (protein)
Unique Ligands	GOL, NA

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4YTB \| pdb_00004ytb	Download File View File

Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) in complex with dipeptide Asp-Gln.

Goulas, T., Mizgalska, D., Garcia-Ferrer, I., Kantyka, T., Guevara, T., Szmigielski, B., Sroka, A., Millan, C., Uson, I., Veillard, F., Potempa, B., Mydel, P., Sola, M., Potempa, J., Gomis-Ruth, F.X.

(2015) Sci Rep 5: 11969-11969

Released	2015-07-01
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Porphyromonas gingivalis W83
Macromolecule	Peptidylarginine deiminase (protein)
Unique Ligands	ASP, AZI, CL, GLN, GOL, IMD, NA, PO4

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4YTG \| pdb_00004ytg	Download File View File

Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) mutant C351A in complex with dipeptide Met-Arg.

Goulas, T., Mizgalska, D., Garcia-Ferrer, I., Kantyka, T., Guevara, T., Szmigielski, B., Sroka, A., Millan, C., Uson, I., Veillard, F., Potempa, B., Mydel, P., Sola, M., Potempa, J., Gomis-Ruth, F.X.

(2015) Sci Rep 5: 11969-11969

Released	2015-07-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Porphyromonas gingivalis W83
Macromolecule	Peptidylarginine deiminase (protein)
Unique Ligands	ARG, AZI, CL, CYS, GOL, MET, NA

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5A24 \| pdb_00005a24	Download File View File

Crystal structure of Dionain-1, the major endopeptidase in the Venus flytrap digestive juice

Risor, M.W., Thomsen, L.R., Sanggaard, K.W., Nielsen, T.A., Thogersen, I.B., Lukassen, M.V., Rossen, L., Garcia-Ferrer, I., Guevara, T., Meinjohanns, E., Nielsen, N.C., Gomis-Ruth, F.X., Enghild, J.J.

(2016) J Biological Chem 291: 2271

Released	2015-12-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Dionaea muscipula
Macromolecule	DIONAIN-1 (protein)
Unique Ligands	E64, PO4

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5M11 \| pdb_00005m11	Download File View File

Structural and functional probing of PorZ, an essential bacterial surface component of the type-IX secretion system of human oral-microbiomic Porphyromonas gingivalis.

Lasica, A.M., Goulas, T., Mizgalska, D., Zhou, X., Ksiazek, M., Madej, M., Guo, Y., Guevara, T., Nowak, M., Potempa, B., Goel, A., Sztukowska, M., Prabhakar, A.T., Bzowska, M., Widziolek, M., Thogersen, I.B., Enghild, J.J., Simonian, M., Kulczyk, A.W., Nguyen, K.-A., Potempa, J., Gomis-Ruth, F.X.

(2016) Sci Rep 6: 37708-37708

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Porphyromonas gingivalis
Macromolecule	Immunoreactive 84kD antigen PG93 (protein)
Unique Ligands	CA, CAC, CL, GOL, PEG, PG4, ZN