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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Innis, C.A."

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Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Escherichia coli K-12 (13)
	Thermus thermophilus HB8 (13)
	Escherichia coli (11)
	synthetic construct (6)
	Rattus norvegicus (3)
	Mus musculus (2)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Bos taurus (1)
	Homo sapiens (1)
	Oncopeltus fasciatus (1)

More...

Taxonomy

	Bacteria (27)
	Eukaryota (11)
	other sequences (6)

Experimental Method

	X-RAY DIFFRACTION (18)
	ELECTRON MICROSCOPY (15)

Polymer Entity Type

	Protein (33)
	RNA (28)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (14)
	3.0 - 3.5 (9)
	3.5 - 4.0 (4)
	> 4.5 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (2)
	2010 - 2014 (9)
	2015 - 2019 (8)
	2020 - 2024 (10)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (3)
	Transferases (2)

Symmetry Type

	Asymmetric (31)
	Cyclic (2)

SCOP Classification

	Small proteins (3)
	All alpha proteins (2)

AllSelected

1 to 25 of 33 Structures

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1LR7 \| pdb_00001lr7	Download File View File

Crystal structure of Fs1, the heparin-binding domain of follistatin, complexed with the heparin analogue sucrose octasulphate (SOS)

Innis, C.A., Hyvonen, M.

(2003) J Biological Chem 278: 39969-39977

Released	2003-07-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rattus norvegicus
Macromolecule	follistatin (protein)
Unique Ligands	SO4

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1LR8 \| pdb_00001lr8	Download File View File

Crystal structure of Fs1, the heparin-binding domain of follistatin, complexed with the heparin analogue D-myo-inositol hexasulphate (Ins6S)

Innis, C.A., Hyvonen, M.

(2003) J Biological Chem 278: 39969-39977

Released	2003-07-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus
Macromolecule	Follistatin (protein)
Unique Ligands	IHS

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1LR9 \| pdb_00001lr9	Download File View File

STRUCTURE OF Fs1, THE HEPARIN-BINDING DOMAIN OF FOLLISTATIN

Innis, C.A., Hyvonen, M.

(2003) J Biological Chem 278: 39969-39977

Released	2003-07-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	Follistatin (protein)

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1VY4 \| pdb_00001vy4	Download File View File

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

(2014) Nat Struct Mol Biol 21: 787-793

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 7
Unique Ligands	K, MG, SF4, ZN

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1VY5 \| pdb_00001vy5	Download File View File

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

(2014) Nat Struct Mol Biol 21: 787-793

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 7
Unique Ligands	K, MG, SF4, ZN

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1VY6 \| pdb_00001vy6	Download File View File

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

(2014) Nat Struct Mol Biol 21: 787-793

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	K, MG, SF4, ZN

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1VY7 \| pdb_00001vy7	Download File View File

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Polikanov, Y.S., Steitz, T.A., Innis, C.A.

(2014) Nat Struct Mol Biol 21: 787-793

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 7
Unique Ligands	K, MG, SF4, ZN

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3GNA \| pdb_00003gna	Download File View File

Crystal structure of the RAG1 nonamer-binding domain with DNA

Yin, F.F., Bailey, S., Innis, C.A., Steitz, T.A., Schatz, D.G.

(2009) Nat Struct Mol Biol 16: 499-508

Released	2009-04-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	V(D)J recombination-activating protein 1 (protein) 5'-D(APCPTPTPAPAPCPAPAPAPAPAPCPC)-3' (nucleic acid) 5'-D(TPGPGPTPTPTPTPTPGPTPTPAPAPG)-3' (nucleic acid)

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3GNB \| pdb_00003gnb	Download File View File

Crystal structure of the RAG1 nonamer-binding domain with DNA

Yin, F.F., Bailey, S., Innis, C.A., Steitz, T.A., Schatz, D.G.

(2009) Nat Struct Mol Biol 16: 499-508

Released	2009-04-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus
Macromolecule	V(D)J recombination-activating protein 1 (protein) 5'-D(APAPTPTPTPTPCPAPGPAPAPAPCPC)-3' (nucleic acid) 5'-D(APGPGPTPTPTPCPTPGPAPAPAPAPC)-3' (nucleic acid)

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3J9W \| pdb_00003j9w	Download File View File

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Sohmen, D., Chiba, S., Shimokawa-Chiba, N., Innis, C.A., Berninghausen, O., Beckmann, R., Ito, K., Wilson, D.N.

(2015) Nat Commun 6: 6941-6941

Released	2015-04-29
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5

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4V5H \| pdb_00004v5h	Download File View File

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Seidelt, B., Innis, C.A., Wilson, D.N., Gartmann, M., Armache, J., Villa, E., Trabuco, L.G., Becker, T., Mielke, T., Schulten, K., Steitz, T.A., Beckmann, R.

(2009) Science 326: 1412-1415

Released	2014-07-09
Method	ELECTRON MICROSCOPY 5.8 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	Unique protein chains: 51 Unique nucleic acid chains: 5

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4V7W \| pdb_00004v7w	Download File View File

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Bulkley, D.P., Innis, C.A., Blaha, G., Steitz, T.A.

(2010) Proc Natl Acad Sci U S A 107: 17158-17163

Released	2014-07-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 48 Unique nucleic acid chains: 3
Unique Ligands	CLM, K, MG, ZN

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4V7X \| pdb_00004v7x	Download File View File

Structure of the Thermus thermophilus ribosome complexed with erythromycin.

Bulkley, D.P., Innis, C.A., Blaha, G., Steitz, T.A.

(2010) Proc Natl Acad Sci U S A 107: 17158-17163

Released	2014-07-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 48 Unique nucleic acid chains: 3
Unique Ligands	ERY, K, MG, ZN

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4V7Y \| pdb_00004v7y	Download File View File

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Bulkley, D.P., Innis, C.A., Blaha, G., Steitz, T.A.

(2010) Proc Natl Acad Sci U S A 107: 17158-17163

Released	2014-07-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 48 Unique nucleic acid chains: 3
Unique Ligands	K, MG, ZIT, ZN

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4V7Z \| pdb_00004v7z	Download File View File

Structure of the Thermus thermophilus 70S ribosome complexed with telithromycin.

Bulkley, D.P., Innis, C.A., Blaha, G., Steitz, T.A.

(2010) Proc Natl Acad Sci U S A 107: 17158-17163

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 48 Unique nucleic acid chains: 3
Unique Ligands	K, MG, TEL, ZN

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4ZER \| pdb_00004zer	Download File View File

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Seefeldt, A.C., Nguyen, F., Antunes, S., Perebaskine, N., Graf, M., Arenz, S., Inampudi, K.K., Douat, C., Guichard, G., Wilson, D.N., Innis, C.A.

(2015) Nat Struct Mol Biol 22: 470-475

Released	2015-05-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli K-12 Oncopeltus fasciatus Thermus thermophilus HB8
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	ARG, K, MG, MPD, SF4, UNX, ZN

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5F8K \| pdb_00005f8k	Download File View File

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Seefeldt, A.C., Graf, M., Perebaskine, N., Nguyen, F., Arenz, S., Mardirossian, M., Scocchi, M., Wilson, D.N., Innis, C.A.

(2016) Nucleic Acids Res 44: 2429-2438

Released	2016-02-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus Escherichia coli K-12 Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	K, MG, SF4, ZN

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5FDU \| pdb_00005fdu	Download File View File

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Seefeldt, A.C., Graf, M., Perebaskine, N., Nguyen, F., Arenz, S., Mardirossian, M., Scocchi, M., Wilson, D.N., Innis, C.A.

(2016) Nucleic Acids Res 44: 2429-2438

Released	2016-01-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli K-12 Palomena prasina Thermus thermophilus HB8
Macromolecule	Unique protein chains: 51 Unique nucleic acid chains: 3
Unique Ligands	A, MG, SF4, ZN

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5FDV \| pdb_00005fdv	Download File View File

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Seefeldt, A.C., Graf, M., Perebaskine, N., Nguyen, F., Arenz, S., Mardirossian, M., Scocchi, M., Wilson, D.N., Innis, C.A.

(2016) Nucleic Acids Res 44: 2429-2438

Released	2016-01-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 Pyrrhocoris apterus Thermus thermophilus HB8
Macromolecule	Unique protein chains: 51 Unique nucleic acid chains: 3
Unique Ligands	A, MG, SF4, ZN

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5JTE \| pdb_00005jte	Download File View File

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Arenz, S., Bock, L.V., Graf, M., Innis, C.A., Beckmann, R., Grubmueller, H., Vaiana, A.C., Wilson, D.N.

(2016) Nat Commun 7: 12026-12026

Released	2016-07-20
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 7
Unique Ligands	ERY, LYS

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5JU8 \| pdb_00005ju8	Download File View File

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Arenz, S., Bock, L.V., Graf, M., Innis, C.A., Beckmann, R., Grubmueller, H., Vaiana, A.C., Wilson, D.N.

(2016) Nat Commun 7: 12026-12026

Released	2016-07-20
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	ERY

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6FKR \| pdb_00006fkr	Download File View File

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Mardirossian, M., Perebaskine, N., Benincasa, M., Gambato, S., Hofmann, S., Huter, P., Muller, C., Hilpert, K., Innis, C.A., Tossi, A., Wilson, D.N.

(2018) Cell Chem Biol 25: 530-539.e7

Released	2018-03-28
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli K-12 Thermus thermophilus HB8 Tursiops truncatus
Macromolecule	Unique protein chains: 51 Unique nucleic acid chains: 3
Unique Ligands	MG, SF4, ZN

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6TBV \| pdb_00006tbv	Download File View File

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Herrero del Valle, A., Innis, C.A.

(2020) Nat Microbiol 5: 554-561

Released	2020-01-01
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	K, MG, ORN, UNX, ZN

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6TC3 \| pdb_00006tc3	Download File View File

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Innis, C.A., Herrero del Valle, A.

(2020) Nat Microbiol 5: 554-561

Released	2020-01-01
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	K, MG, ORN, UNX, ZN

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7NSO \| pdb_00007nso	Download File View File

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Beckert, B., Wilson, D.N.

(2021) Nat Commun 12: 4466-4466

Released	2021-07-14
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	ERY

1 to 25 of 33 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1LR7 | pdb_00001lr7

1LR8 | pdb_00001lr8

1LR9 | pdb_00001lr9

1VY4 | pdb_00001vy4

1VY5 | pdb_00001vy5

1VY6 | pdb_00001vy6

1VY7 | pdb_00001vy7

3GNA | pdb_00003gna

3GNB | pdb_00003gnb

3J9W | pdb_00003j9w

4V5H | pdb_00004v5h

4V7W | pdb_00004v7w

4V7X | pdb_00004v7x

4V7Y | pdb_00004v7y

4V7Z | pdb_00004v7z

4ZER | pdb_00004zer

5F8K | pdb_00005f8k

5FDU | pdb_00005fdu

5FDV | pdb_00005fdv

5JTE | pdb_00005jte

5JU8 | pdb_00005ju8

6FKR | pdb_00006fkr

6TBV | pdb_00006tbv

6TC3 | pdb_00006tc3

7NSO | pdb_00007nso