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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Mok, Y.F."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Plasmodium vivax Sal-1 (8)
	Mus musculus (5)
	Homo sapiens (3)
	Clostridium perfringens (2)
	Plasmodium falciparum 3D7 (2)
	Oryctolagus cuniculus (1)
	Vicugna pacos (1)

Taxonomy

	Eukaryota (13)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (12)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

	Protein (15)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (4)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)
	3.5 - 4.0 (3)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (12)
	2020 - 2024 (2)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Asymmetric (11)
	Cyclic (6)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 15 of 15 Structures

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3M6G \| pdb_00003m6g	Download File View File

Crystal structure of actin in complex with lobophorolide

Allingham, J.S.

(2010) Chem Biol 17: 802-807

Released	2010-09-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Actin, alpha skeletal muscle (protein)
Unique Ligands	ATP, CA, LO3, MG

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4Z8N \| pdb_00004z8n	Download File View File

Crystal structure of the erythrocyte-binding domain from Plasmodium vivax reticulocyte-binding protein 2a (PvRBP2a)

Gruszczyk, J., Tham, W.H.

(2016) Proc Natl Acad Sci U S A 113: E191-E200

Released	2015-12-16
Method	X-RAY DIFFRACTION 2.124 Å
Organisms	Plasmodium vivax Sal-1
Macromolecule	Reticulocyte-binding protein 2a (protein)
Unique Ligands	CA, CL, MG, PEG

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5VFX \| pdb_00005vfx	Download File View File

Structure of an accessory protein of the pCW3 relaxosome in complex with the origin of transfer (oriT) DNA

Traore, D.A.K., Wisniewski, J.A., Flanigan, S.F., Conroy, P.J., Panjikar, S., Mok, Y.-F., Lao, C., Griffin, M.D.W., Adams, V., Rood, J.I., Whisstock, J.C.

(2018) Nat Commun 9: 3732-3732

Released	2018-04-18
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Clostridium perfringens
Macromolecule	TcpK (protein) oriT (nucleic acid)

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5VFY \| pdb_00005vfy	Download File View File

Structure of an accessory protein of the pCW3 relaxosome

Traore, D.A.K., Wisniewski, J.A., Flanigan, S.F., Conroy, P.J., Panjikar, S., Mok, Y.-F., Lao, C., Griffin, M.D.W., Adams, V., Rood, J.I., Whisstock, J.C.

(2018) Nat Commun 9: 3732-3732

Released	2018-04-18
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Clostridium perfringens
Macromolecule	TcpK (protein)

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5W53 \| pdb_00005w53	Download File View File

Crystal structure of the erythrocyte-binding domain from Plasmodium vivax reticulocyte-binding protein 2b (PvRBP2b)

Gruszczyk, J., Tham, W.H.

(2018) Science 359: 48-55

Released	2017-11-29
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Plasmodium vivax Sal-1
Macromolecule	Reticulocyte binding protein 2, putative (protein)
Unique Ligands	K, SCN

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6BPA \| pdb_00006bpa	Download File View File

Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to monoclonal antibody 3E9

Gruszczyk, J., Chan, L.J., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Mus musculus Plasmodium vivax Sal-1
Macromolecule	Monoclonal antibody 3E9 Fab heavy chain (protein) Monoclonal antibody 3E9 Fab light chain (protein) Reticulocyte binding protein 2, putative (protein)
Unique Ligands	BR

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6BPB \| pdb_00006bpb	Download File View File

Plasmodium vivax invasion blocking monoclonal antibody 4F7

Gruszczyk, J., Chan, L.J., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Mus musculus
Macromolecule	Monoclonal antibody 4F7 Fab heavy chain (protein) Monoclonal antibody 4F7 Fab light chain (protein)

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6BPC \| pdb_00006bpc	Download File View File

Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to monoclonal antibody 4F7

Gruszczyk, J., Chan, L.J., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Mus musculus Plasmodium vivax Sal-1
Macromolecule	Monoclonal antibody 4F7 Fab heavy chain (protein) Monoclonal antibody 4F7 Fab light chain (protein) Reticulocyte binding protein 2, putative (protein)

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6BPD \| pdb_00006bpd	Download File View File

Plasmodium vivax invasion blocking monoclonal antibody 10B12

Gruszczyk, J., Chan, L.J., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Mus musculus
Macromolecule	Monoclonal antibody 10B12 Fab heavy chain (protein) Monoclonal antibody 10B12 Fab light chain (protein)

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6BPE \| pdb_00006bpe	Download File View File

Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to monoclonal antibody 6H1

Gruszczyk, J., Chan, L.J., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Mus musculus Plasmodium vivax Sal-1
Macromolecule	Monoclonal antibody 6H1 Fab heavy chain (protein) Monoclonal antibody 6H1 Fab light chain (protein) Reticulocyte binding protein 2, putative (protein)

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6D03 \| pdb_00006d03	Download File View File

Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human reticulocytes; one molecule of parasite ligand.

Gruszczyk, J., Huang, R.K., Hong, C., Yu, Z., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	ELECTRON MICROSCOPY 3.68 Å
Organisms	Homo sapiens Plasmodium vivax Sal-1
Macromolecule	Reticulocyte binding protein 2, putative (protein) Serotransferrin (protein) Transferrin receptor protein 1 (protein)
Unique Ligands	CA, CO3, FE, NAG
Unique branched monosaccharides	NAG

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6D04 \| pdb_00006d04	Download File View File

Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human reticulocytes; two molecules of parasite ligand, subclass 1.

Gruszczyk, J., Huang, R.K., Hong, C., Yu, Z., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	ELECTRON MICROSCOPY 3.74 Å
Organisms	Homo sapiens Plasmodium vivax Sal-1
Macromolecule	Reticulocyte binding protein 2, putative (protein) Serotransferrin (protein) Transferrin receptor protein 1 (protein)
Unique Ligands	CA, CO3, FE, NAG
Unique branched monosaccharides	NAG

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6D05 \| pdb_00006d05	Download File View File

Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human reticulocytes; two molecules of parasite ligand, subclass 2.

Gruszczyk, J., Huang, R.K., Hong, C., Yu, Z., Tham, W.H.

(2018) Nature 559: 135-139

Released	2018-06-20
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens Plasmodium vivax Sal-1
Macromolecule	Reticulocyte binding protein 2, putative (protein) Serotransferrin (protein) Transferrin receptor protein 1 (protein)
Unique Ligands	CA, CO3, FE, NAG
Unique branched monosaccharides	NAG

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7S7Q \| pdb_00007s7q	Download File View File

Heterodimeric complex of Pf12 and Pf41 of Plasmodium falciparum

Dietrich, M.H., Tham, W.H.

(2022) FEMS Microbes 3: xtac005-xtac005

Released	2022-03-02
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Merozoite surface protein P12 (protein) Merozoite surface protein P41 (protein)
Unique Ligands	CD, NAG

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7S7R \| pdb_00007s7r	Download File View File

Plasmodium falciparum protein Pf12 bound to nanobody G7

Dietrich, M.H., Tham, W.H.

(2022) FEMS Microbes 3: xtac005-xtac005

Released	2022-03-02
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Plasmodium falciparum 3D7 Vicugna pacos
Macromolecule	Merozoite surface protein P12 (protein) Nanobody G7 (protein)
Unique Ligands	NA, NAG, SCN

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3M6G | pdb_00003m6g

Crystal structure of actin in complex with lobophorolide

4Z8N | pdb_00004z8n

Crystal structure of the erythrocyte-binding domain from Plasmodium vivax reticulocyte-binding protein 2a (PvRBP2a)

5VFX | pdb_00005vfx

Structure of an accessory protein of the pCW3 relaxosome in complex with the origin of transfer (oriT) DNA

5VFY | pdb_00005vfy

Structure of an accessory protein of the pCW3 relaxosome

5W53 | pdb_00005w53

Crystal structure of the erythrocyte-binding domain from Plasmodium vivax reticulocyte-binding protein 2b (PvRBP2b)

6BPA | pdb_00006bpa

Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to monoclonal antibody 3E9

6BPB | pdb_00006bpb

Plasmodium vivax invasion blocking monoclonal antibody 4F7

6BPC | pdb_00006bpc

Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to monoclonal antibody 4F7

6BPD | pdb_00006bpd

Plasmodium vivax invasion blocking monoclonal antibody 10B12

6BPE | pdb_00006bpe

Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to monoclonal antibody 6H1

6D03 | pdb_00006d03

Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human reticulocytes; one molecule of parasite ligand.

6D04 | pdb_00006d04

Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human reticulocytes; two molecules of parasite ligand, subclass 1.

6D05 | pdb_00006d05

Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human reticulocytes; two molecules of parasite ligand, subclass 2.

7S7Q | pdb_00007s7q

Heterodimeric complex of Pf12 and Pf41 of Plasmodium falciparum

7S7R | pdb_00007s7r

Plasmodium falciparum protein Pf12 bound to nanobody G7

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3M6G | pdb_00003m6g

4Z8N | pdb_00004z8n

5VFX | pdb_00005vfx

5VFY | pdb_00005vfy

5W53 | pdb_00005w53

6BPA | pdb_00006bpa

6BPB | pdb_00006bpb

6BPC | pdb_00006bpc

6BPD | pdb_00006bpd

6BPE | pdb_00006bpe

6D03 | pdb_00006d03

6D04 | pdb_00006d04

6D05 | pdb_00006d05

7S7Q | pdb_00007s7q

7S7R | pdb_00007s7r