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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Nan, Y."

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Saccharomyces cerevisiae YJM789 (4)
	Rattus norvegicus (3)
	Homo sapiens (2)
	Human coronavirus OC43 (2)
	Murine hepatitis virus (1)
	Severe acute respiratory syndrome coronavirus 2 (1)

Taxonomy

	Eukaryota (8)
	Riboviria (4)

Experimental Method

X-RAY DIFFRACTION (8)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (4)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (2)
	2020 - 2024 (5)

Enzyme Classification Name

Transferases (3)

Symmetry Type

Asymmetric (8)

SCOP Classification

Alpha and beta proteins (a+b) (3)

AllSelected

1 to 8 of 8 Structures

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4QYY \| pdb_00004qyy	Download File View File

Discovery of Novel, Dual Mechanism ERK Inhibitors by Affinity Selection Screening of an Inactive Kinase State

Deng, Y., Shipps, G.W., Cooper, A., English, J.M., Annis, D.A., Carr, D., Nan, Y., Wang, T., Zhu, Y.H., Chuang, C., Dayananth, P., Hruza, A.W., Xiao, L., Jin, W., Kirschmeier, P., Windsor, W.T., Samatar, A.A.

(2014) J Med Chem 57: 8817-8826

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	3G7, SO4

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6CPW \| pdb_00006cpw	Download File View File

Discovery of 3(S)-thiomethyl pyrrolidine ERK inhibitors for oncology

Hruza, A., Hruza, A.

(2018) Bioorg Med Chem Lett 28: 2029-2034

Released	2018-05-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	F8V, SO4

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6DCG \| pdb_00006dcg	Download File View File

Discovery of MK-8353: An Orally Bioavailable Dual Mechanism ERK Inhibitor for Oncology

Boga, S.B., Deng, Y., Zhu, L., Nan, Y., Cooper, A., Shipps Jr., G.W., Doll, R., Shih, N., Zhu, H., Sun, R., Wang, T., Paliwal, S., Tsui, H., Gao, X., Yao, X., Desai, J., Wang, J., Alhassan, A.B., Kelly, J., Patel, M., Muppalla, K., Gudipati, S., Zhang, L., Buevich, A., Hesk, D., Carr, D., Dayananth, P., Mei, H., Cox, K., Sherborne, B., Hruza, A.W., Xiao, L., Jin, W., Long, B., Liu, G., Taylor, S.A., Kirschmeier, P., Windsor, W.T., Bishop, R., Samatar, A.A.

(2018) ACS Med Chem Lett 9: 761-767

Released	2018-08-08
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	G67, SO4

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8HQT \| pdb_00008hqt	Download File View File

The complex structure of COPI cargo sorting module with SARS-CoV-2 Spike KxHxx sorting motif

Ma, W.F., Nan, Y.N., Yang, M.R., Li, Y.Q.

(2023) Acta Pharm Sin B 13: 3043-3053

Released	2023-12-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae YJM789 Severe acute respiratory syndrome coronavirus 2
Macromolecule	Coatomer subunit beta' (protein) SARS-CoV-2 Spike KxHxx motif (protein)

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8HQV \| pdb_00008hqv	Download File View File

The complex structure of COPI cargo sorting module with HCoV-OC43 Spike KTSHxx sorting motif

Ma, W.F., Nan, Y.N., Yang, M.R., Li, Y.Q.

(2023) Acta Pharm Sin B 13: 3043-3053

Released	2023-12-20
Method	X-RAY DIFFRACTION 1.398 Å
Organisms	Human coronavirus OC43 Saccharomyces cerevisiae YJM789
Macromolecule	Coatomer subunit beta' (protein) HCoV-OC43 Spike KTSHxx sorting motif (protein)

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8HQW \| pdb_00008hqw	Download File View File

The complex structure of COPI cargo sorting module with MHV Spike Hxx sorting motif

Ma, W.F., Nan, Y.N., Yang, M.R., Li, Y.Q.

(2023) Acta Pharm Sin B 13: 3043-3053

Released	2023-12-20
Method	X-RAY DIFFRACTION 1.405 Å
Organisms	Murine hepatitis virus Saccharomyces cerevisiae YJM789
Macromolecule	Coatomer subunit beta',MHV Spike Hxx sorting motif (protein)

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8HQX \| pdb_00008hqx	Download File View File

The complex structure of COPI cargo sorting module with TAT-WDM peptide

Ma, W.F., Nan, Y.N., Yang, M.R., Li, Y.Q.

(2023) Acta Pharm Sin B 13: 3043-3053

Released	2023-12-20
Method	X-RAY DIFFRACTION 1.538 Å
Organisms	Homo sapiens Saccharomyces cerevisiae YJM789
Macromolecule	Coatomer subunit beta' (protein) TAT-WDM KxKxx motif (protein)

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8HR0 \| pdb_00008hr0	Download File View File

The complex structure of COPII coat with HCoV-OC43 DD sorting motif

Ma, W.F., Nan, Y.N., Yang, M.R., Li, Y.Q.

(2023) Acta Pharm Sin B 13: 3043-3053

Released	2023-12-20
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Homo sapiens Human coronavirus OC43
Macromolecule	HCoV-OC43 (protein) Protein transport protein Sec23A (protein) Protein transport protein Sec24A (protein) Vesicle-trafficking protein SEC22b (protein)
Unique Ligands	ZN

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4QYY | pdb_00004qyy

Discovery of Novel, Dual Mechanism ERK Inhibitors by Affinity Selection Screening of an Inactive Kinase State

6CPW | pdb_00006cpw

Discovery of 3(S)-thiomethyl pyrrolidine ERK inhibitors for oncology

6DCG | pdb_00006dcg

Discovery of MK-8353: An Orally Bioavailable Dual Mechanism ERK Inhibitor for Oncology

8HQT | pdb_00008hqt

The complex structure of COPI cargo sorting module with SARS-CoV-2 Spike KxHxx sorting motif

8HQV | pdb_00008hqv

The complex structure of COPI cargo sorting module with HCoV-OC43 Spike KTSHxx sorting motif

8HQW | pdb_00008hqw

The complex structure of COPI cargo sorting module with MHV Spike Hxx sorting motif

8HQX | pdb_00008hqx

The complex structure of COPI cargo sorting module with TAT-WDM peptide

8HR0 | pdb_00008hr0

The complex structure of COPII coat with HCoV-OC43 DD sorting motif

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4QYY | pdb_00004qyy

6CPW | pdb_00006cpw

6DCG | pdb_00006dcg

8HQT | pdb_00008hqt

8HQV | pdb_00008hqv

8HQW | pdb_00008hqw

8HQX | pdb_00008hqx

8HR0 | pdb_00008hr0