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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Pinol, J."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Mycoplasmoides genitalium G37 (7)
	Mycoplasmoides pneumoniae M129 (3)
	Mesomycoplasma hyopneumoniae J (2)
	Mus musculus (2)
	Mycoplasmoides genitalium (2)

Taxonomy

	Bacteria (14)
	Eukaryota (2)

Experimental Method

	X-RAY DIFFRACTION (11)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (1)
	2015 - 2019 (7)
	2020 - 2024 (6)

Membrane Protein Annotation

mpstruc (3)

Symmetry Type

	Asymmetric (11)
	Cyclic (5)

SCOP Classification

	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)

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1 to 15 of 15 Structures

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1YDX \| pdb_00001ydx	Download File View File

Crystal structure of Type-I restriction-modification system S subunit from M. genitalium

Machado, B., Quijada, O., Pinol, J., Fita, I., Querol, E., Carpena, X.

(2005) J Mol Biology 351: 749-762

Released	2005-08-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycoplasmoides genitalium
Macromolecule	type I restriction enzyme specificity protein MG438 (protein)
Unique Ligands	CL

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4DCZ \| pdb_00004dcz	Download File View File

Crystal structure of a domain from a mycoplasma genitalium terminal organelle protein

Calisto, B.M., Martinelli, L., Fita, I.

(2012) Mol Microbiol 86: 382-393

Released	2013-01-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mycoplasmoides genitalium G37
Macromolecule	DnaJ-like protein MG200 (protein)

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4XNG \| pdb_00004xng	Download File View File

Central Domain of Mycoplasma Genitalium Terminal Organelle protein MG491

Martinelli, L., Fita, I.

(2016) PLoS Pathog 12: e1005533-e1005533

Released	2016-03-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mycoplasmoides genitalium
Macromolecule	Uncharacterized protein MG218.1 (protein)

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5OX7 \| pdb_00005ox7	Download File View File

Structure of P110 from Mycoplasma genitalium at 2.4A with potassium ion

Aparicio, D., Fita, I.

(2018) Nat Commun 9: 4471-4471

Released	2018-10-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycoplasmoides genitalium G37
Macromolecule	Mgp-operon protein 3 (protein)
Unique Ligands	K

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6R3T \| pdb_00006r3t	Download File View File

Structure of P110 from Mycoplasma Genitalium at 2.7A

Aparicio, D., Fita, I.

(2018) Nat Commun 9: 4471-4471

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.73 Å
Organisms	Mycoplasmoides genitalium G37
Macromolecule	Mgp-operon protein 3 (protein)
Unique Ligands	K, PO4

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6R43 \| pdb_00006r43	Download File View File

Structure of P110 from Mycoplasma Genitalium complexed with 6'-SL

Aparicio, D., Fita, I.

(2018) Nat Commun 9: 4471-4471

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Mycoplasmoides genitalium G37
Macromolecule	Mgp-operon protein 3 (protein)
Unique Ligands	K, PO4
Unique branched monosaccharides	BGC, GAL, SIA

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6RNN \| pdb_00006rnn	Download File View File

P46, an immunodominant surface protein from Mycoplasma hyopneumoniae

Guasch, A., Gonzalez-Gonzalez, L., Fita, I.

(2020) Acta Crystallogr D Struct Biol 76: 418-427

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus
Macromolecule	Immunoglobulin heavy chain (protein) Immunoglobulin light chain (protein)

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6RUT \| pdb_00006rut	Download File View File

Mycoplasma Genitalium Heterodimer Nap Complex (P140-P110 globular)

Fita, I., Aparicio, D.

(2020) Nat Commun 11: 2877-2877

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Mycoplasmoides genitalium G37
Macromolecule	Adhesin P1 (protein) Mgp-operon protein 3 (protein)

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6RUX \| pdb_00006rux	Download File View File

P46, an immunodominant surface protein from Mycoplasma hyopneumoniae

Guasch, A., Gonzalez-Gonzalez, L., Fita, I.

(2020) Acta Crystallogr D Struct Biol 76: 418-427

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mesomycoplasma hyopneumoniae J
Macromolecule	46 kDa surface antigen (protein)
Unique Ligands	NA
Unique branched monosaccharides	GLC

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6S3T \| pdb_00006s3t	Download File View File

P46, an immunodominant surface protein from Mycoplasma hyopneumoniae

Guasch, A., Gonzalez-Gonzalez, L., Fita, I.

(2020) Acta Crystallogr D Struct Biol 76: 418-427

Released	2019-11-13
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Mesomycoplasma hyopneumoniae J Mus musculus
Macromolecule	46 kDa surface antigen (protein) Immunoglobulin heavy chain (protein) Immunoglobulin light chain (protein)
Unique Ligands	NA, XYP

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6S3U \| pdb_00006s3u	Download File View File

Adhesin P140 from Mycoplasma Genitalium

Fita, I., Aparicio, D.

(2020) Nat Commun 11: 2877-2877

Released	2020-06-24
Method	X-RAY DIFFRACTION 3.24 Å
Organisms	Mycoplasmoides genitalium G37
Macromolecule	Adhesin P1 (protein)

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6YRK \| pdb_00006yrk	Download File View File

P140-P110 complex fitted into the cryo-electron density map of the heterodimer

Scheffer, M.P., Aparicio, D.

(2020) Nat Commun 11: 2877-2877

Released	2020-06-24
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Mycoplasmoides genitalium G37
Macromolecule	Adhesin P1 (protein) Mgp-operon protein 3 (protein)

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8A9A \| pdb_00008a9a	Download File View File

Single Particle cryo-EM of the lipid binding protein P116 (MPN213) from Mycoplasma pneumoniae at 3.3 Angstrom resolution.

Sprankel, L., Vizarraga, D.

(2023) Nat Struct Mol Biol 30: 321-329

Released	2023-02-22
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Mycoplasmoides pneumoniae M129
Macromolecule	Lipid binding protein P116 (MPN213) (protein)

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8A9B \| pdb_00008a9b	Download File View File

Single Particle cryo-EM of the empty lipid binding protein P116 (MPN213) from Mycoplasma pneumoniae at 4 Angstrom resolution

Sprankel, L., Vizarraga, D.

(2023) Nat Struct Mol Biol 30: 321-329

Released	2023-02-22
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Mycoplasmoides pneumoniae M129
Macromolecule	Lipid binding protein P116 (MPN213) (protein)

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9FCH \| pdb_00009fch	Download File View File

P116 dimer in the full state (PDB structure of the full-length ectodomain truncated to amino acids 246-818)

Mager, S.

To be published

Released	2024-05-29
Method	ELECTRON MICROSCOPY 6.52 Å
Organisms	Mycoplasmoides pneumoniae M129
Macromolecule	Uncharacterized protein MG075 homolog (protein)

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1YDX | pdb_00001ydx

Crystal structure of Type-I restriction-modification system S subunit from M. genitalium

4DCZ | pdb_00004dcz

Crystal structure of a domain from a mycoplasma genitalium terminal organelle protein

4XNG | pdb_00004xng

Central Domain of Mycoplasma Genitalium Terminal Organelle protein MG491

5OX7 | pdb_00005ox7

Structure of P110 from Mycoplasma genitalium at 2.4A with potassium ion

6R3T | pdb_00006r3t

Structure of P110 from Mycoplasma Genitalium at 2.7A

6R43 | pdb_00006r43

Structure of P110 from Mycoplasma Genitalium complexed with 6'-SL

6RNN | pdb_00006rnn

P46, an immunodominant surface protein from Mycoplasma hyopneumoniae

6RUT | pdb_00006rut

Mycoplasma Genitalium Heterodimer Nap Complex (P140-P110 globular)

6RUX | pdb_00006rux

P46, an immunodominant surface protein from Mycoplasma hyopneumoniae

6S3T | pdb_00006s3t

P46, an immunodominant surface protein from Mycoplasma hyopneumoniae

6S3U | pdb_00006s3u

Adhesin P140 from Mycoplasma Genitalium

6YRK | pdb_00006yrk

P140-P110 complex fitted into the cryo-electron density map of the heterodimer

8A9A | pdb_00008a9a

Single Particle cryo-EM of the lipid binding protein P116 (MPN213) from Mycoplasma pneumoniae at 3.3 Angstrom resolution.

8A9B | pdb_00008a9b

Single Particle cryo-EM of the empty lipid binding protein P116 (MPN213) from Mycoplasma pneumoniae at 4 Angstrom resolution

9FCH | pdb_00009fch

P116 dimer in the full state (PDB structure of the full-length ectodomain truncated to amino acids 246-818)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1YDX | pdb_00001ydx

4DCZ | pdb_00004dcz

4XNG | pdb_00004xng

5OX7 | pdb_00005ox7

6R3T | pdb_00006r3t

6R43 | pdb_00006r43

6RNN | pdb_00006rnn

6RUT | pdb_00006rut

6RUX | pdb_00006rux

6S3T | pdb_00006s3t

6S3U | pdb_00006s3u

6YRK | pdb_00006yrk

8A9A | pdb_00008a9a

8A9B | pdb_00008a9b

9FCH | pdb_00009fch