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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Rodriguez-Banqueri, A."

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Tannerella forsythia (10)
	Nepenthes ventricosa x Nepenthes alata (4)
	Galleria mellonella (2)
	Methanosarcina acetivorans C2A (2)
	Staphylococcus aureus (2)
	Tannerella forsythia 92A2 (2)
	Escherichia coli (1)
	Homo sapiens (1)
	Limulus polyphemus (1)
	Porphyromonas gingivalis (1)

More...

Taxonomy

	Bacteria (16)
	Eukaryota (8)
	Archaea (2)

Experimental Method

X-RAY DIFFRACTION (22)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (11)
	2.0 - 2.5 (5)
	3.0 - 3.5 (1)
	> 4.5 (1)

Release Date

	2015 - 2019 (3)
	2020 - 2024 (19)

Enzyme Classification Name

Hydrolases (9)

Symmetry Type

	Asymmetric (21)
	Cyclic (1)

AllSelected

1 to 22 of 22 Structures

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6I9A \| pdb_00006i9a	Download File View File

Porphyromonas gingivalis gingipain K (Kgp) in complex with inhibitor KYT-36

Gomis-Ruth, F.X., Guevara, T., Rofdriguez-Banqueri, A.

(2019) Sci Rep 9: 4935-4935

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Porphyromonas gingivalis
Macromolecule	Lys-gingipain W83 (protein)
Unique Ligands	CA, DTV, EPE, GOL, H8E, NA, UNX

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6R7U \| pdb_00006r7u	Download File View File

Selenomethionine variant of Tannerella forsythia promirolysin mutant E225A

Rodriguez-Banqueri, A., Guevara, T., Ksiazek, M., Potempa, J., Gomis-Ruth, F.X.

(2020) IUCrJ 7: 18-29

Released	2020-02-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Tannerella forsythia
Macromolecule	Mirolysin (protein)
Unique Ligands	BO3, CA, GOL, ZN

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6R7V \| pdb_00006r7v	Download File View File

Tannerella forsythia promirolysin mutant E225A

Rodriguez-Banqueri, A., Guevara, T., Ksiazek, M., Potempa, J., Gomis-Ruth, F.X.

(2020) IUCrJ 7: 18-29

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Tannerella forsythia
Macromolecule	Mirolysin (protein)
Unique Ligands	CA, GOL, ZN

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6R7W \| pdb_00006r7w	Download File View File

Tannerella forsythia mature mirolysin in complex with a cleaved peptide.

Rodriguez-Banqueri, A., Guevara, T., Ksiazek, M., Potempa, J., Gomis-Ruth, F.X.

(2020) IUCrJ 7: 18-29

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Tannerella forsythia Tannerella forsythia 92A2
Macromolecule	Mirolysin (protein) Putative lipoprotein (protein)
Unique Ligands	CA, CIT, EOH, ZN

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6ZA2 \| pdb_00006za2	Download File View File

Crystal structure of dimeric latent PorU from Porphyromonas gingivalis

Gomis-Ruth, F.X., Goulas, T., Guevara, T., Rodriguez-Banqueri, A., Potempa, J.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-09-29
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Porphyromonas gingivalis ATCC 33277
Macromolecule	Por secretion system protein porU (protein)
Unique Ligands	CA

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7SKL \| pdb_00007skl	Download File View File

Complex between S. aureus aureolysin and IMPI mutant I57I

Mendes, S.R., Eckhard, U., Rodriguez-Banqueri, A., Guevara, T., Gomis-Ruth, F.X.

(2022) Comput Struct Biotechnol J 20: 534-544

Released	2022-01-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Galleria mellonella Staphylococcus aureus
Macromolecule	IMPI alpha (protein) Zinc metalloproteinase aureolysin (protein)
Unique Ligands	CA, EDO, ZN

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7SKM \| pdb_00007skm	Download File View File

Complex between S. aureus aureolysin and wt IMPI.

Mendes, S.R., Eckhard, U., Rodriguez-Banqueri, A., Guevara, T., Gomis-Ruth, F.X.

(2022) Comput Struct Biotechnol J 20: 534-544

Released	2022-01-26
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Galleria mellonella Staphylococcus aureus
Macromolecule	IMPI alpha (protein) Zinc metalloproteinase aureolysin (protein)
Unique Ligands	CA, EDO, PEG, ZN

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7ZU8 \| pdb_00007zu8	Download File View File

Crystal Structure of the zymogen form of the glutamic-class prolyl-endopeptidase neprosin at 2.05 A resolution in presence of the crystallophore Lu-Xo4.

Del Amo-Maestro, L., Eckhard, U., Rodriguez-Banqueri, A., Mendes, S.R., Guevara, T., Gomis-Ruth, F.X.

(2022) Nat Commun 13: 4446-4446

Released	2022-08-10
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Nepenthes ventricosa x Nepenthes alata
Macromolecule	Glutamyl endopeptidase Neprosin (protein)
Unique Ligands	ACT, K93
Unique branched monosaccharides	FUC, NAG

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7ZVA \| pdb_00007zva	Download File View File

Crystal Structure of the native zymogen form of the glutamic-class prolyl-endopeptidase neprosin at 1.80 A resolution.

Del Amo-Maestro, L., Eckhard, U., Rodriguez-Banqueri, A., Mendes, S.R., Guevara, T., Gomis-Ruth, F.X.

(2022) Nat Commun 13: 4446-4446

Released	2022-08-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nepenthes ventricosa x Nepenthes alata
Macromolecule	C-terminal peptidase (protein)
Unique Ligands	ACT, GOL, IPA
Unique branched monosaccharides	FUC, NAG

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7ZVB \| pdb_00007zvb	Download File View File

Crystal Structure of the mature form of the glutamic-class prolyl-endopeptidase neprosin at 2.35 A resolution.

Del Amo-Maestro, L., Eckhard, U., Rodriguez-Banqueri, A., Mendes, S.R., Guevara, T., Gomis-Ruth, F.X.

(2022) Nat Commun 13: 4446-4446

Released	2022-08-10
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Nepenthes ventricosa x Nepenthes alata
Macromolecule	C-terminal peptidase (protein)
Unique Ligands	NAG, PGE
Unique branched monosaccharides	BMA, MAN, NAG

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7ZVC \| pdb_00007zvc	Download File View File

Second crystal form of the mature glutamic-class prolyl-endopeptidase neprosin at 1.85 A resolution.

Rodriguez-Banqueri, A., Eckhard, U., Del Amo-Maestro, L., Mendes, S.R., Guevara, T., Gomis-Ruth, F.X.

(2022) Nat Commun 13: 4446-4446

Released	2022-08-10
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Nepenthes ventricosa x Nepenthes alata
Macromolecule	C-terminal peptidase (protein) GLY-GLY-GLY-GLY (protein)
Unique Ligands	GLY, NAG, NI, SO4
Unique branched monosaccharides	BMA, NAG

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8A28 \| pdb_00008a28	Download File View File

Structure of the astacin zymogen of LAST-MAM from Limulus polyphemus

Guevara, T., Rodriguez Banqueri, A.

(2022) Acta Crystallogr D Struct Biol 78: 1347-1357

Released	2022-10-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Limulus polyphemus
Macromolecule	Metalloendopeptidase (protein)
Unique Ligands	GOL, MG, PEG, PGE, ZN

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8B2M \| pdb_00008b2m	Download File View File

Matrix-metallopeptidase inhibitor Potempin A (PotA) from Tannerella forsythia

Potempa, J., Ksiazek, M., Goulas, T., Cuppari, A., Rodriguez-Banqueri, A., Arolas, J.L., Lopez-Pelegrin, M., Garcia-Ferrer, I., Guevara, T.

(2023) Chem Sci 14: 869-888

Released	2022-12-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Tannerella forsythia
Macromolecule	Tannerella forsythia Potempin A (PotA) (protein)
Unique Ligands	NI

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8B2N \| pdb_00008b2n	Download File View File

Potempin A (PotA) from Tannerella forsythia in complex with the catalytic domain of human MMP-12

Potempa, J., Ksiazek, M., Goulas, T., Cuppari, A., Rodriguez-Banqueri, A., Arolas, J.L., Lopez-Pelegrin, M., Garcia-Ferrer, I., Guevara, T.

(2023) Chem Sci 14: 869-888

Released	2022-12-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens Tannerella forsythia
Macromolecule	Macrophage metalloelastase (protein) Tannerella forsythia potempin A (PotA) (protein)
Unique Ligands	CA, ZN

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8B2Q \| pdb_00008b2q	Download File View File

Matrix-metallopeptidase inhibitor Potempin A (PotA) from Tannerella forsythia in complex with T. forsythia karilysin.

Potempa, J., Ksiazek, M., Goulas, T., Cuppari, A., Rodriguez-Banqueri, A., Arolas, J.L., Lopez-Pelegrin, M., Garcia-Ferrer, I., Guevara, T.

(2023) Chem Sci 14: 869-888

Released	2022-12-21
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Tannerella forsythia
Macromolecule	Karilysin long form Kly38 (protein) Tannerella forsythia potempin A (PotA) (protein)
Unique Ligands	CA, GOL, MES, ZN

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8CD8 \| pdb_00008cd8	Download File View File

Ulilysin - C269A with AEBSF complex

Rodriguez-Banqueri, A., Eckhard, U., Gomis-Ruth, F.X.

(2023) Dalton Trans 52: 3610-3622

Released	2023-03-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli Methanosarcina acetivorans C2A
Macromolecule	GLY-SER-SER (protein) Ulilysin (protein)
Unique Ligands	AES, CA, GOL, ZN

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8CDB \| pdb_00008cdb	Download File View File

Proulilysin E229A structure

Rodriguez-Banqueri, A., Eckhard, U., Gomis-Ruth, F.X.

(2023) Dalton Trans 52: 3610-3622

Released	2023-03-22
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Methanosarcina acetivorans C2A
Macromolecule	Ulilysin (protein)
Unique Ligands	CA, ZN

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8EHB \| pdb_00008ehb	Download File View File

Structure of Tannerella forsythia selenomethionine-derivatized potempin D mutant I53M

Gomis-Ruth, F.X.

(2023) Chem Sci 14: 869-888

Released	2022-12-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Tannerella forsythia 92A2
Macromolecule	Putative lipoprotein (protein)
Unique Ligands	EDO

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8EHC \| pdb_00008ehc	Download File View File

Structure of Tannerella forsythia selenomethionine-derivatized potempin E

Gomis-Ruth, F.X.

(2023) Chem Sci 14: 869-888

Released	2022-12-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tannerella forsythia
Macromolecule	Potempin E (PotE) (protein)
Unique Ligands	GOL

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8EHD \| pdb_00008ehd	Download File View File

Structure of Tannerella forsythia potempin E

Gomis-Ruth, F.X.

(2023) Chem Sci 14: 869-888

Released	2022-12-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tannerella forsythia
Macromolecule	Potempin E (PotE) (protein)
Unique Ligands	EPE

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8EHE \| pdb_00008ehe	Download File View File

Structure of Tannerella forsythia potempin C in complex with mirolase

Gomis-Ruth, F.X.

(2023) Chem Sci 14: 869-888

Released	2022-12-21
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Tannerella forsythia
Macromolecule	Mirolase (protein) Potempin C (PotC) (protein)
Unique Ligands	CA, EDO, GOL, NA