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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Rypniewski, W."

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Search Summary

This query matches 121 Structures.

Refinements

Structure Determination Methodology

experimental (121)

Scientific Name of Source Organism

	Homo sapiens (20)
	Thermus thermophilus (18)
	Moritella marina (7)
	Mus musculus (6)
	Caenorhabditis elegans (5)
	Candida albicans SC5314 (5)
	Fusarium oxysporum (5)
	synthetic construct (5)
	Pyrococcus abyssi GE5 (4)
	Thermococcus chitonophagus (4)

More...

Taxonomy

	Eukaryota (56)
	Bacteria (37)
	Archaea (8)
	other sequences (5)
	unclassified bacterial viruses (3)

Experimental Method

X-RAY DIFFRACTION (121)

Polymer Entity Type

	Protein (67)
	RNA (54)
	Other (2)

Refinement Resolution (Å)

	0.5 - 1.0 (4)
	1.0 - 1.5 (25)
	1.5 - 2.0 (48)
	2.0 - 2.5 (22)
	2.5 - 3.0 (15)
	3.0 - 3.5 (7)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (10)
	2005 - 2009 (17)
	2010 - 2014 (34)
	2015 - 2019 (23)
	2020 - 2024 (30)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (29)
	Transferases (20)
	Isomerases (1)
	Oxidoreductases (1)

Symmetry Type

	Cyclic (36)
	Asymmetric (24)
	Dihedral (8)

SCOP Classification

	Alpha and beta proteins (a+b) (23)
	Alpha and beta proteins (a/b) (8)
	All beta proteins (12)
	All alpha proteins (3)

AllSelected

1 to 25 of 121 Structures

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1BQC \| pdb_00001bqc	Download File View File

BETA-MANNANASE FROM THERMOMONOSPORA FUSCA

Hilge, M., Gloor, S.M., Piontek, K.

(1998) Structure 6: 1433-1444

Released	1999-08-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermobifida fusca
Macromolecule	PROTEIN (BETA-MANNANASE) (protein)

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1LNL \| pdb_00001lnl	Download File View File

Structure of deoxygenated hemocyanin from Rapana thomasiana

Perbandt, M., Guthoehrlein, E.W., Rypniewski, W., Idakieva, K., Stoeva, S., Voelter, W., Genov, N., Betzel, C.

(2003) Biochemistry 42: 6341-6346

Released	2003-06-03
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Rapana venosa
Macromolecule	hemocyanin (protein)
Unique Ligands	CU, NAG

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1M2T \| pdb_00001m2t	Download File View File

Mistletoe Lectin I from Viscum album in Complex with Adenine Monophosphate. Crystal Structure at 1.9 A Resolution

Krauspenhaar, R., Rypniewski, W., Kalkura, N., Moore, K., DeLucas, L., Stoeva, S., Mikhailov, A., Voelter, W., Betzel, C.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1704-1707

Released	2003-06-24
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Viscum album
Macromolecule	mistletoe lectin I A chain (protein) mistletoe lectin I B chain (protein)
Unique Ligands	ADE, FUC, GOL, NAG

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1MFM \| pdb_00001mfm	Download File View File

MONOMERIC HUMAN SOD MUTANT F50E/G51E/E133Q AT ATOMIC RESOLUTION

Ferraroni, M., Rypniewski, W., Wilson, K.S., Orioli, P.L., Viezzoli, M.S., Banci, L., Bertini, I., Mangani, S.

(1999) J Mol Biology 288: 413-426

Released	1999-04-21
Method	X-RAY DIFFRACTION 1.02 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COPPER,ZINC SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	CD, CL, CU, ZN

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1PPZ \| pdb_00001ppz	Download File View File

Trypsin complexes at atomic and ultra-high resolution

Schmidt, A., Jelsch, C., Rypniewski, W., Lamzin, V.S.

(2003) J Biological Chem 278: 43357-43362

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.23 Å
Organisms	Fusarium oxysporum
Macromolecule	Trypsin (protein)
Unique Ligands	SO4

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1PQ5 \| pdb_00001pq5	Download File View File

Trypsin at pH 5, 0.85 A

Schmidt, A., Jelsch, C., Rypniewski, W., Lamzin, V.S.

(2003) J Biological Chem 278: 43357-43362

Released	2003-11-11
Method	X-RAY DIFFRACTION 0.85 Å
Organisms	Fusarium oxysporum
Macromolecule	Trypsin (protein)
Unique Ligands	ARG, SO4

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1PQ7 \| pdb_00001pq7	Download File View File

Trypsin at 0.8 A, pH5 / borax

Schmidt, A., Jelsch, C., Rypniewski, W., Lamzin, V.S.

(2003) J Biological Chem 278: 43357-43362

Released	2003-11-11
Method	X-RAY DIFFRACTION 0.8 Å
Organisms	Fusarium oxysporum
Macromolecule	Trypsin (protein)
Unique Ligands	ARG, SO4

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1PQ8 \| pdb_00001pq8	Download File View File

Trypsin at pH 4 at atomic resolution

Schmidt, A., Jelsch, C., Rypniewski, W., Lamzin, V.S.

(2003) J Biological Chem 278: 43357-43362

Released	2003-11-11
Method	X-RAY DIFFRACTION 1 Å
Organisms	Fusarium oxysporum
Macromolecule	GLY-GLY-ARG PEPTIDE (protein) Trypsin (protein)
Unique Ligands	CIT, LYS, SO4

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1PQA \| pdb_00001pqa	Download File View File

Trypsin with PMSF at atomic resolution

Schmidt, A., Jelsch, C., Rypniewski, W., Lamzin, V.S.

(2003) J Biological Chem 278: 43357-43362

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.23 Å
Organisms	Fusarium oxysporum
Macromolecule	Trypsin (protein)
Unique Ligands	SO4

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1Q5T \| pdb_00001q5t	Download File View File

Gln48 PLA2 separated from Vipoxin from the venom of Vipera ammodytes meridionalis.

Georgieva, D.N., Perbandt, M., Rypniewski, W., Hristov, K., Genov, N., Betzel, C.

(2004) Biochem Biophys Res Commun 316: 33-38

Released	2004-05-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vipera ammodytes meridionalis
Macromolecule	Phospholipase A2 inhibitor (protein)
Unique Ligands	SO4

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1R3O \| pdb_00001r3o	Download File View File

Crystal structure of the first RNA duplex in L-conformation at 1.9A resolution

Vallazza, M., Perbandt, M., Klussmann, S., Rypniewski, W., Erdmann, V.A., Betzel, C.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1-7

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.9 Å
Macromolecule	L-RNA (nucleic acid)

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1RGB \| pdb_00001rgb	Download File View File

Phospholipase A2 from Vipera ammodytes meridionalis

Georgieva, D.N.

(2004) Biochem Biophys Res Commun 319: 1314-1321

Released	2005-01-18
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Vipera ammodytes meridionalis
Macromolecule	Phospholipase A2 (protein)
Unique Ligands	ELD

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1TJD \| pdb_00001tjd	Download File View File

The crystal structure of the reduced disulphide bond isomerase, DsbC, from Escherichia coli

Banaszak, K., Mechin, I., Frost, G., Rypniewski, W.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1747-1752

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Thiol:disulfide interchange protein dsbC (protein)

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2G32 \| pdb_00002g32	Download File View File

Crystal structure of an RNA racemate

Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 659-664

Released	2006-05-30
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Thermus thermophilus
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid)
Unique Ligands	CA, GOL

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2GPM \| pdb_00002gpm	Download File View File

Crystal structure of an RNA racemate

Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 659-664

Released	2006-06-27
Method	X-RAY DIFFRACTION 1.4 Å
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid)
Unique Ligands	CA

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2GQ4 \| pdb_00002gq4	Download File View File

Crystal structure of an RNA racemate

Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 659-664

Released	2006-06-27
Method	X-RAY DIFFRACTION 1.35 Å
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid)
Unique Ligands	CA, GOL

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2GQ5 \| pdb_00002gq5	Download File View File

Crystal structure of an RNA racemate

Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 659-664

Released	2006-06-27
Method	X-RAY DIFFRACTION 1.4 Å
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid)
Unique Ligands	CA, GOL

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2GQ6 \| pdb_00002gq6	Download File View File

Crystal structure of an RNA racemate

Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 659-664

Released	2006-06-27
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid)
Unique Ligands	CA, GOL

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2GQ7 \| pdb_00002gq7	Download File View File

Crystal structure of an RNA racemate

Rypniewski, W., Vallazza, M., Perbandt, M., Klussmann, S., Betzel, C., Erdmann, V.A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 659-664

Released	2006-06-27
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	RNA (5'-R((0C)P(0C)P(0G)P(0C)P(0C)P(0U)P(0G)P(0G))-3') (nucleic acid) RNA (5'-R((0C)P(0U)P(0G)P(0G)P(0G)P(0C)P(0G)P(0G))-3') (nucleic acid)
Unique Ligands	CA, GOL

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2MAN \| pdb_00002man	Download File View File

MANNOTRIOSE COMPLEX OF THERMOMONOSPORA FUSCA BETA-MANNANASE

Hilge, M., Gloor, S.M., Piontek, K.

(1998) Structure 6: 1433-1444

Released	1999-08-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermobifida fusca
Macromolecule	PROTEIN (BETA-MANNANASE) (protein)
Unique branched monosaccharides	BMA, MAN

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2POC \| pdb_00002poc	Download File View File

The crystal structure of isomerase domain of glucosamine-6-phosphate synthase from Candida albicans

Raczynska, J., Olchowy, J., Milewski, S., Rypniewski, W.

(2007) J Mol Biology 372: 672-688

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Candida albicans SC5314
Macromolecule	isomerase domain of glutamine-fructose-6-phosphate transaminase (isomerizing) (protein)
Unique Ligands	ACT, BG6, NA, UD1

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2PUT \| pdb_00002put	Download File View File

The crystal structure of isomerase domain of glucosamine-6-phosphate synthase from Candida albicans

Raczynska, J., Olchowy, J., Milewski, S., Rypniewski, W.

(2007) J Mol Biology 372: 672-688

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Candida albicans SC5314
Macromolecule	isomerase domain of glutamine-fructose-6-phosphate transaminase (isomerizing) (protein)
Unique Ligands	ACT, F6R, NA, UD1

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2PUV \| pdb_00002puv	Download File View File

The crystal structure of isomerase domain of glucosamine-6-phosphate synthase from Candida albicans

Raczynska, J., Olchowy, J., Milewski, S., Rypniewski, W.

(2007) J Mol Biology 372: 672-688

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Candida albicans SC5314
Macromolecule	isomerase domain of glutamine-fructose-6-phosphate transaminase (isomerizing) (protein)
Unique Ligands	ACT, M6R, NA, UD1

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2PUW \| pdb_00002puw	Download File View File

The crystal structure of isomerase domain of glucosamine-6-phosphate synthase from Candida albicans

Raczynska, J., Olchowy, J., Milewski, S., Rypniewski, W.

(2007) J Mol Biology 372: 672-688

Released	2007-09-11
Method	X-RAY DIFFRACTION 3.151 Å
Organisms	Candida albicans SC5314
Macromolecule	isomerase domain of glutamine-fructose-6-phosphate transaminase (isomerizing) (protein)
Unique Ligands	BG6, CL

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2R9K \| pdb_00002r9k	Download File View File

Crystal Structure of Misteltoe Lectin I in Complex with Phloretamide

Meyer, A., Rypniewski, W., Celewicz, L., Erdmann, V.A., Voelter, W., Betzel, C.

(2007) Biochem Biophys Res Commun 364: 195-200

Released	2007-10-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Viscum album
Macromolecule	Beta-galactoside-specific lectin 1 (protein) Beta-galactoside-specific lectin 1 chain B (protein)
Unique Ligands	CL, GOL, NAG, SGI, SO4
Unique branched monosaccharides	NAG

1 to 25 of 121 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BQC | pdb_00001bqc

1LNL | pdb_00001lnl

1M2T | pdb_00001m2t

1MFM | pdb_00001mfm

1PPZ | pdb_00001ppz

1PQ5 | pdb_00001pq5

1PQ7 | pdb_00001pq7

1PQ8 | pdb_00001pq8

1PQA | pdb_00001pqa

1Q5T | pdb_00001q5t

1R3O | pdb_00001r3o

1RGB | pdb_00001rgb

1TJD | pdb_00001tjd

2G32 | pdb_00002g32

2GPM | pdb_00002gpm

2GQ4 | pdb_00002gq4

2GQ5 | pdb_00002gq5

2GQ6 | pdb_00002gq6

2GQ7 | pdb_00002gq7

2MAN | pdb_00002man

2POC | pdb_00002poc

2PUT | pdb_00002put

2PUV | pdb_00002puv

2PUW | pdb_00002puw

2R9K | pdb_00002r9k