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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Seo, H.S."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Lentinula edodes (5)
	Drosophila melanogaster (3)
	Danio rerio (1)

Taxonomy

Eukaryota (9)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (4)
	2.5 - 3.0 (2)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (1)
	2020 - 2024 (5)

Enzyme Classification Name

Hydrolases (8)

Symmetry Type

	Cyclic (4)
	Asymmetric (3)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (1)
	Artifacts (1)

AllSelected

1 to 9 of 9 Structures

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Explore in 3D

3NTH \| pdb_00003nth	Download File View File

Crystal structure of Tudor and Aubergine [R13(me2s)] complex

Liu, H.P., Huang, Y., Li, Z.Z., Gong, W.M., Xu, R.M.

(2010) Genes Dev 24: 1876-1881

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Drosophila melanogaster
Macromolecule	Maternal protein tudor (protein) peptide from Aubergine (protein)

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3NTI \| pdb_00003nti	Download File View File

Crystal structure of Tudor and Aubergine [R15(me2s)] complex

Liu, H.P., Huang, Y., Li, Z.Z., Gong, W.M., Xu, R.M.

(2010) Genes Dev 24: 1876-1881

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Drosophila melanogaster
Macromolecule	Maternal protein tudor (protein) peptide from Aubergine (protein)

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3NTK \| pdb_00003ntk	Download File View File

Crystal structure of Tudor

Liu, H.P., Huang, Y., Li, Z.Z., Gong, W.M., Xu, R.M.

(2010) Genes Dev 24: 1876-1881

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Drosophila melanogaster
Macromolecule	Maternal protein tudor (protein)

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4ORD \| pdb_00004ord	Download File View File

Crystal Structure of Zebra Fish Thioesterase Superfamily Member 2

Yu, S.S., Li, H., Gao, F., Xu, H., Gong, W.M.

To be published

Released	2015-02-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Danio rerio
Macromolecule	Thioesterase Superfamily Member 2 (protein)

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6JBS \| pdb_00006jbs	Download File View File

Bifunctional xylosidase/glucosidase LXYL

Gong, W.M., Yang, L.Y.

(2020) Commun Biol 3: 22-22

Released	2020-02-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lentinula edodes
Macromolecule	Beta-D-xylosidase/beta-D-glucosidase (protein)
Unique Ligands	NAG, TRS
Unique branched monosaccharides	BMA, MAN, NAG

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6KJ0 \| pdb_00006kj0	Download File View File

Bifunctional xylosidase/glucosidase LXYL mutant E529Q C2221

Gong, W.M., Yang, L.Y.

(2020) Commun Biol 3: 22-22

Released	2020-02-26
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Lentinula edodes
Macromolecule	Beta-D-xylosidase/beta-D-glucosidase (protein)
Unique Ligands	BKR, NAG, XYP
Unique branched monosaccharides	BMA, MAN, NAG

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7EY1 \| pdb_00007ey1	Download File View File

Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose

Gong, W.M., Yang, L.Y.

To be published

Released	2022-06-01
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Lentinula edodes
Macromolecule	Beta-D-xylosidase/beta-D-glucosidase (protein)
Unique Ligands	BKR, BMA, MAN, NAG, XYP, XYZ
Unique branched monosaccharides	BMA, MAN, NAG

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7EY2 \| pdb_00007ey2	Download File View File

Bifunctional xylosidase/glucosidase LXYL D300N mutant with intermediate substrate xylose

Gong, W.M., Yang, L.Y.

To be published

Released	2022-06-01
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Lentinula edodes
Macromolecule	Beta-D-xylosidase/beta-D-glucosidase (protein)
Unique Ligands	BMA, NAG, XYL, XYZ
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

7YO7 \| pdb_00007yo7	Download File View File

Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose, 5 seconds

Yang, L.Y.

To be published

Released	2023-08-09
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Lentinula edodes
Macromolecule	Beta-D-xylosidase/beta-D-glucosidase (protein)
Unique Ligands	BKR, NAG, XLS
Unique branched monosaccharides	MAN, NAG

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3NTH | pdb_00003nth

Crystal structure of Tudor and Aubergine [R13(me2s)] complex

3NTI | pdb_00003nti

Crystal structure of Tudor and Aubergine [R15(me2s)] complex

3NTK | pdb_00003ntk

Crystal structure of Tudor

4ORD | pdb_00004ord

Crystal Structure of Zebra Fish Thioesterase Superfamily Member 2

6JBS | pdb_00006jbs

Bifunctional xylosidase/glucosidase LXYL

6KJ0 | pdb_00006kj0

Bifunctional xylosidase/glucosidase LXYL mutant E529Q C2221

7EY1 | pdb_00007ey1

Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose

7EY2 | pdb_00007ey2

Bifunctional xylosidase/glucosidase LXYL D300N mutant with intermediate substrate xylose

7YO7 | pdb_00007yo7

Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose, 5 seconds

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3NTH | pdb_00003nth

3NTI | pdb_00003nti

3NTK | pdb_00003ntk

4ORD | pdb_00004ord

6JBS | pdb_00006jbs

6KJ0 | pdb_00006kj0

7EY1 | pdb_00007ey1

7EY2 | pdb_00007ey2

7YO7 | pdb_00007yo7