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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Swaminathan, S."

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Search Summary

This query matches 582 Structures.

Refinements

Structure Determination Methodology

experimental (582)

Scientific Name of Source Organism

	Homo sapiens (46)
	Clostridium botulinum (37)
	Sinorhizobium meliloti 1021 (24)
	synthetic construct (15)
	Saccharomyces cerevisiae (13)
	Hepatitis C virus JFH-1 (12)
	Agrobacterium fabrum str. C58 (11)
	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (11)
	Bacillus subtilis (10)
	Clostridium tetani (10)

More...

Taxonomy

	Bacteria (431)
	Eukaryota (88)
	Archaea (35)
	Riboviria (25)
	other sequences (15)
	Eukaryota (eukaryotes) (3)
	unclassified sequences (3)

Experimental Method

	X-RAY DIFFRACTION (568)
	SOLUTION NMR (13)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (578)
	RNA (11)
	DNA (8)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (166)
	2.0 - 2.5 (245)
	2.5 - 3.0 (130)
	3.0 - 3.5 (12)
	3.5 - 4.0 (2)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (13)
	2000 - 2004 (58)
	2005 - 2009 (290)
	2010 - 2014 (170)
	2015 - 2019 (26)
	2020 - 2024 (23)

Enzyme Classification Name

	Hydrolases (125)
	Transferases (96)
	Lyases (37)
	Oxidoreductases (43)
	Isomerases (22)
	Ligases (12)
	Translocases (1)

Membrane Protein Annotation

	OPM (2)
	MemProtMD (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (283)
	Cyclic (295)
	Dihedral (94)

SCOP Classification

	Alpha and beta proteins (a/b) (212)
	Artifacts (124)
	Alpha and beta proteins (a+b) (103)
	All beta proteins (56)
	All alpha proteins (25)
	Multi-domain proteins (alpha and beta) (12)
	Coiled coil proteins (14)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 582 Structures

Page 1 of 24

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1AF9 \| pdb_00001af9	Download File View File

TETANUS NEUROTOXIN C FRAGMENT

Umland, T.C., Wingert, L., Swaminathan, S., Furey, W.F., Schmidt, J.J., Sax, M.

(1997) Nat Struct Biol 4: 788-792

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Clostridium tetani
Macromolecule	TETANUS NEUROTOXIN (protein)

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1B54 \| pdb_00001b54	Download File View File

CRYSTAL STRUCTURE OF A YEAST HYPOTHETICAL PROTEIN-A STRUCTURE FROM BNL'S HUMAN PROTEOME PROJECT

Swaminathan, S., Eswaramoorthy, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2003) Acta Crystallogr D Biol Crystallogr 59: 127-135

Released	1999-01-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	YEAST HYPOTHETICAL PROTEIN (protein)
Unique Ligands	PLP

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1CCD \| pdb_00001ccd	Download File View File

REFINED STRUCTURE OF RAT CLARA CELL 17 KDA PROTEIN AT 3.0 ANGSTROMS RESOLUTION

Umland, T.C., Swaminathan, S., Furey, W., Singh, G., Pletcher, J., Sax, M.

(1992) J Mol Biology 224: 441-448

Released	1994-01-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Rattus rattus
Macromolecule	CLARA CELL 17 kD PROTEIN (protein)
Unique Ligands	SO4

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1CQV \| pdb_00001cqv	Download File View File

CRYSTAL STRUCTURE OF STAPHYLOCOCCAL ENTEROTOXIN C2 AT 100K CRYSTALLIZED AT PH 5.0

Kumaran, D., Swaminathan, S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1270-1275

Released	1999-08-22
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Staphylococcus aureus
Macromolecule	PROTEIN (STAPHYLOCOCCAL ENTEROTOXIN C2) (protein)
Unique Ligands	ZN

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1CT5 \| pdb_00001ct5	Download File View File

CRYSTAL STRUCTURE OF YEAST HYPOTHETICAL PROTEIN YBL036C-SELENOMET CRYSTAL

Eswaramoorthy, S., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2003) Acta Crystallogr D Biol Crystallogr 59: 127-135

Released	1999-09-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (YEAST HYPOTHETICAL PROTEIN, SELENOMET) (protein)
Unique Ligands	PLP

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1D0H \| pdb_00001d0h	Download File View File

THE HC FRAGMENT OF TETANUS TOXIN COMPLEXED WITH N-ACETYL-GALACTOSAMINE

Emsley, P., Fotinou, C., Black, I., Fairweather, N.F., Charles, I.G., Watts, C., Hewitt, E., Isaacs, N.W.

(2000) J Biological Chem 275: 8889-8894

Released	2000-03-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Clostridium tetani
Macromolecule	PROTEIN (TETANUS TOXIN HC) (protein)
Unique Ligands	A2G, SO4

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1DFQ \| pdb_00001dfq	Download File View File

THE HC FRAGMENT OF TETANUS TOXIN COMPLEXED WITH SIALIC ACID

Emsley, P., Fotinou, C., Black, I., Fairweather, N.F., Charles, I.G., Watts, C., Hewitt, E., Isaacs, N.W.

(2000) J Biological Chem 275: 8889-8894

Released	2000-03-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Clostridium tetani
Macromolecule	TETANUS TOXIN HC (protein)
Unique Ligands	SLB

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1DIW \| pdb_00001diw	Download File View File

THE HC FRAGMENT OF TETANUS TOXIN COMPLEXED WITH GALACTOSE

Emsley, P., Fotinou, C., Black, I., Fairweather, N.F., Charles, I.G., Watts, C., Hewitt, E., Isaacs, N.W.

(2000) J Biological Chem 275: 8889-8894

Released	2000-03-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Clostridium tetani
Macromolecule	TETANUS TOXIN HC (protein)
Unique Ligands	GAL

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1DLL \| pdb_00001dll	Download File View File

The HC fragement of tetanus toxin complexed with lactose

Emsley, P., Fotinou, C., Black, I., Fairweather, N.F., Charles, I.G., Watts, C., Hewitt, E., Isaacs, N.W.

(2000) J Biological Chem 275: 8889-8894

Released	2000-03-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium tetani
Macromolecule	TETANUS TOXIN (protein)
Unique Ligands	GOL
Unique branched monosaccharides	BGC, GAL

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1EPW \| pdb_00001epw	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM NEUROTOXIN TYPE B

Swaminathan, S., Eswaramoorthy, S.

(2000) Nat Struct Biol 7: 693-699

Released	2000-11-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	SO4, ZN

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1ESF \| pdb_00001esf	Download File View File

STAPHYLOCOCCAL ENTEROTOXIN A

Schad, E.M., Svensson, L.A.

(1995) EMBO J 14: 3292-3301

Released	1996-07-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus
Macromolecule	STAPHYLOCOCCAL ENTEROTOXIN A (protein)
Unique Ligands	CD

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1F1M \| pdb_00001f1m	Download File View File

CRYSTAL STRUCTURE OF OUTER SURFACE PROTEIN C (OSPC)

Kumaran, D., Eswaramoorthy, S., Dunn, J.J., Swaminathan, S.

(2001) EMBO J 20: 971-978

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Borreliella burgdorferi
Macromolecule	OUTER SURFACE PROTEIN C (protein)
Unique Ligands	ZN

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1F31 \| pdb_00001f31	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH A TRISACCHARIDE

Swaminathan, S., Eswaramoorthy, S.

(2000) Nat Struct Biol 7: 693-699

Released	2000-11-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	SO4, ZN
Unique branched monosaccharides	GLA, GLC, SIA

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1F89 \| pdb_00001f89	Download File View File

Crystal structure of Saccharomyces cerevisiae Nit3, a member of branch 10 of the nitrilase superfamily

Kumaran, D., Eswaramoorthy, S., Studier, F.W., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2003) Proteins 52: 283-291

Released	2001-10-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	32.5 KDA PROTEIN YLR351C (protein)

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1FV2 \| pdb_00001fv2	Download File View File

The Hc fragment of tetanus toxin complexed with an analogue of its ganglioside receptor GT1B

Fotinou, C., Emsley, P., Black, I., Ando, H., Ishida, H., Kiso, M., Sinha, K.A., Fairweather, N.F., Isaacs, N.W.

(2001) J Biological Chem 276: 32274-32281

Released	2001-09-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Clostridium tetani
Macromolecule	TETANUS TOXIN HEAVY CHAIN (protein)
Unique Ligands	CEQ, PO4
Unique branched monosaccharides	BGC, GAL, NGA, SIA, SLB

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1FV3 \| pdb_00001fv3	Download File View File

THE HC FRAGMENT OF TETANUS TOXIN COMPLEXED WITH AN ANALOGUE OF ITS GANGLIOSIDE RECEPTOR GT1B

Fotinou, C., Emsley, P., Black, I., Ando, H., Ishida, H., Kiso, M., Sinha, K.A., Fairweather, N.F., Isaacs, N.W.

(2001) J Biological Chem 276: 32274-32281

Released	2001-09-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Clostridium tetani
Macromolecule	TETANUS TOXIN HEAVY CHAIN (protein)
Unique Ligands	CEQ, PO4
Unique branched monosaccharides	BGC, GAL, NGA, SIA, SLB

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1G9A \| pdb_00001g9a	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 3)

Eswaramoorthy, S., Swaminathan, S.

(2002) Biochemistry 41: 9795-9802

Released	2002-11-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	BAB, ZN

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1G9B \| pdb_00001g9b	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 1)

Eswaramoorthy, S., Swaminathan, S.

(2002) Biochemistry 41: 9795-9802

Released	2002-11-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	BAB, ZN

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1G9C \| pdb_00001g9c	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 4)

Eswaramoorthy, S., Swaminathan, S.

(2002) Biochemistry 41: 9795-9802

Released	2002-11-13
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	BAB, ZN

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1G9D \| pdb_00001g9d	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 2)

Eswaramoorthy, S., Swaminathan, S.

(2002) Biochemistry 41: 9795-9802

Released	2002-11-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	BAB, ZN

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1GGQ \| pdb_00001ggq	Download File View File

OUTER SURFACE PROTEIN C (OSPC) OF BORRELIA BURGDORFERI STRAIN B31

Dunn, J.J., Lawson, C.L.

(2001) EMBO J 20: 971-978

Released	2001-03-14
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Borreliella burgdorferi B31
Macromolecule	OUTER SURFACE PROTEIN C (protein)
Unique Ligands	MG

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1I1E \| pdb_00001i1e	Download File View File

CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH DOXORUBICIN

Eswaramoorthy, S., Kumaran, D., Swaminathan, S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1743-1746

Released	2001-11-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN TYPE B (protein)
Unique Ligands	DM2, SO4, ZN