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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Xiao, Z."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Bos taurus (8)
	Homo sapiens (7)
	Bacteroides thetaiotaomicron VPI-5482 (4)
	Synechococcus elongatus PCC 7942 = FACHB-805 (3)
	Conus magus (1)
	Human immunodeficiency virus 2 (1)
	Human immunodeficiency virus type 2 (ISOLATE GHANA-1) (1)
	Human immunodeficiency virus type 2 subtype A (isolate Ghana-1) (1)
	Mus musculus (1)
	Streptomyces griseoverticillatus (1)

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Taxonomy

	Eukaryota (17)
	Bacteria (8)
	Riboviria (3)
	Eukaryota (eukaryotes) (1)
	Riboviria (RNA viruses and viroids) (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (22)
	SOLUTION NMR (9)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (6)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (4)
	2000 - 2004 (4)
	2005 - 2009 (10)
	2010 - 2014 (5)
	2015 - 2019 (6)

Enzyme Classification Name

	Oxidoreductases (5)
	Hydrolases (10)
	Transferases (6)
	Translocases (2)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	OPM (1)

Symmetry Type

	Asymmetric (15)
	Cyclic (11)
	Dihedral (4)
	Icosahedral (1)

SCOP Classification

	Membrane and cell surface proteins and peptides (2)
	Alpha and beta proteins (a+b) (7)
	All alpha proteins (2)
	Small proteins (6)
	All beta proteins (3)
	Artifacts (2)
	Peptides (1)

AllSelected

1 to 25 of 31 Structures

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1C8N \| pdb_00001c8n	Download File View File

TOBACCO NECROSIS VIRUS

Oda, Y., Fukuyama, K.

(2000) J Mol Biology 300: 153-169

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	unidentified tobacco necrosis virus
Macromolecule	COAT PROTEIN (protein)
Unique Ligands	CA

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1DYT \| pdb_00001dyt	Download File View File

X-ray crystal structure of ECP (RNase 3) at 1.75 A

Mallorqui-Fernandez, G., Pous, J., Peracaula, R., Maeda, T., Tada, H., Yamada, H., Seno, M., De Llorens, R., Gomis-Rueth, F.X., Coll, M.

(2000) J Mol Biology 300: 1297

Released	2001-02-08
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	EOSINOPHIL CATIONIC PROTEIN (protein)
Unique Ligands	CIT, FE

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1IVZ \| pdb_00001ivz	Download File View File

Solution structure of the SEA domain from murine hypothetical protein homologous to human mucin 16

Maeda, T., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 13174-13182

Released	2002-10-02
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	hypothetical protein 1110008I14RIK (protein)

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1LA4 \| pdb_00001la4	Download File View File

Solution Structure of SGTx1

Lee, C.W., Roh, S.H., Kim, S., Endoh, H., Kodera, Y., Maeda, T., Swartz, K.J., Kim, J.I.

(2004) Biochemistry 43: 890-897

Released	2003-11-11
Method	SOLUTION NMR
Organisms	Stromatopelma calceatum griseipes
Macromolecule	SGTx1 (protein)

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1LMT \| pdb_00001lmt	Download File View File

STRUCTURE OF A CONFORMATIONALLY CONSTRAINED ARG-GLY-ASP SEQUENCE INSERTED INTO HUMAN LYSOZYME

Matsushima, M., Song, H.

(1995) J Biological Chem 270: 5687-5690

Released	1995-03-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	HUMAN LYSOZYME (protein)
Unique Ligands	CL
Unique branched monosaccharides	NAG

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1LZ5 \| pdb_00001lz5	Download File View File

STRUCTURAL AND FUNCTIONAL ANALYSES OF THE ARG-GLY-ASP SEQUENCE INTRODUCED INTO HUMAN LYSOZYME

Matsushima, M., Inaka, K., Yamada, T., Sekiguchi, K., Kikuchi, M.

(1993) J Biological Chem 268: 10588-10592

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	HUMAN LYSOZYME (protein)
Unique Ligands	CL

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1LZ6 \| pdb_00001lz6	Download File View File

STRUCTURAL AND FUNCTIONAL ANALYSES OF THE ARG-GLY-ASP SEQUENCE INTRODUCED INTO HUMAN LYSOZYME

Matsushima, M., Inaka, K., Yamada, T., Sekiguchi, K., Kikuchi, M.

(1993) J Biological Chem 268: 10588-10592

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	HUMAN LYSOZYME (protein)
Unique Ligands	CL

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1NC8 \| pdb_00001nc8	Download File View File

HIGH-RESOLUTION SOLUTION NMR STRUCTURE OF THE MINIMAL ACTIVE DOMAIN OF THE HUMAN IMMUNODEFICIENCY VIRUS TYPE-2 NUCLEOCAPSID PROTEIN, 15 STRUCTURES

Kodera, Y., Sato, K., Tsukahara, T., Komatsu, H., Maeda, T., Kohno, T.

(1998) Biochemistry 37: 17704-17713

Released	1999-05-25
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 2
Macromolecule	NUCLEOCAPSID PROTEIN (protein)
Unique Ligands	ZN

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1OMG \| pdb_00001omg	Download File View File

NMR STUDY OF OMEGA-CONOTOXIN MVIIA

Kohno, T., Kim, J.-I., Kobayashi, K., Kodera, Y., Maeda, T., Sato, K.

(1995) Biochemistry 34: 10256-10265

Released	1996-04-03
Method	SOLUTION NMR
Organisms	Conus magus
Macromolecule	OMEGA-CONOTOXIN MVIIA (protein)

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1QCM \| pdb_00001qcm	Download File View File

AMYLOID BETA PEPTIDE (25-35), NMR, 20 STRUCTURES

Kohno, T., Kobayashi, K., Maeda, T., Sato, K., Takashima, A.

(1996) Biochemistry 35: 16094-16104

Released	1997-07-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	AMYLOID BETA PEPTIDE (protein)

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2DDE \| pdb_00002dde	Download File View File

Structure of cinnamycin complexed with lysophosphatidylethanolamine

Hosoda, K., Ohya, M., Kohno, T., Maeda, T., Endo, S., Wakamatsu, K.

(1996) J Biochem 119: 226-230

Released	2006-02-21
Method	SOLUTION NMR
Organisms	Streptomyces griseoverticillatus
Macromolecule	LANTIBIOTIC CINNAMYCIN (protein)
Unique Ligands	LSP

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2DI2 \| pdb_00002di2	Download File View File

NMR structure of the HIV-2 nucleocapsid protein

Matsui, T., Kodera, Y., Endoh, H., Miyauchi, E., Komatsu, H., Sato, K., Tanaka, T., Kohno, T., Maeda, T.

(2007) J Biochem 141: 269-277

Released	2007-03-13
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Nucleocapsid protein p7 (protein)
Unique Ligands	ZN

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2E1X \| pdb_00002e1x	Download File View File

NMR structure of the HIV-2 nucleocapsid protein

Matsui, T., Kodera, Y., Miyauchi, E., Tanaka, H., Endoh, H., Komatsu, H., Tanaka, T., Kohno, T., Maeda, T.

(2007) Biochem Biophys Res Commun 358: 673-678

Released	2007-06-05
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 2 subtype A (isolate Ghana-1)
Macromolecule	Gag-Pol polyprotein (Pr160Gag-Pol) (protein)
Unique Ligands	ZN

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2EC7 \| pdb_00002ec7	Download File View File

Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein

Matsui, T., Kodera, Y., Tanaka, T., Endoh, H., Tanaka, H., Miyauchi, E., Komatsu, H., Kohno, T., Maeda, T.

(2009) Biochemistry 48: 4314-4323

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 2 (ISOLATE GHANA-1)
Macromolecule	Gag polyprotein (Pr55Gag) (protein)
Unique Ligands	ZN

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3ASN \| pdb_00003asn	Download File View File

Bovine heart cytochrome C oxidase in the fully oxidized state measured at 1.7470 angstrom wavelength

Suga, M., Yano, N., Muramoto, K., Shinzawa-Itoh, K., Maeda, T., Yamashita, E., Tsukihara, T., Yoshikawa, S.

(2011) Acta Crystallogr D Biol Crystallogr 67: 742-744

Released	2011-08-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, UNX, ZN

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3ASO \| pdb_00003aso	Download File View File

Bovine heart cytochrome C oxidase in the fully oxidized state measured at 0.9 angstrom wavelength

Suga, M., Yano, N., Muramoto, K., Shinzawa-Itoh, K., Maeda, T., Yamashita, E., Tsukihara, T., Yoshikawa, S.

(2011) Acta Crystallogr D Biol Crystallogr 67: 742-744

Released	2011-08-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, UNX, ZN

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3B1J \| pdb_00003b1j	Download File View File

Crystal structure of Glyceraldehyde-3-Phosphate Dehydrogenase complexed with CP12 in the presence of copper from Synechococcus elongatus

Matsumura, H., Kai, A., Inoue, T.

(2011) Structure 19: 1846-1854

Released	2012-01-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	CP12 (protein) Glyceraldehyde 3-phosphate dehydrogenase (NADP+) (protein)
Unique Ligands	CU, NAD

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3B1K \| pdb_00003b1k	Download File View File

Crystal structure of Glyceraldehyde-3-Phosphate Dehydrogenase complexed with CP12 in the absence of copper from Synechococcus elongatus

Matsumura, H., Kai, A., Inoue, T.

(2011) Structure 19: 1846-1854

Released	2012-01-11
Method	X-RAY DIFFRACTION 3.302 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	CP12 (protein) Glyceraldehyde 3-phosphate dehydrogenase (NADP+) (protein)
Unique Ligands	NAD

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3B20 \| pdb_00003b20	Download File View File

Crystal structure of Glyceraldehyde-3-Phosphate Dehydrogenase complexed with NADfrom Synechococcus elongatus"

Matsumura, H., Kai, A., Maeda, T., Inoue, T.

(2011) Structure 19: 1846-1854

Released	2012-01-11
Method	X-RAY DIFFRACTION 2.398 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Glyceraldehyde 3-phosphate dehydrogenase (NADP+) (protein)
Unique Ligands	NAD, SO4