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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "de la Cruz, F."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Escherichia coli (13)
	Escherichia coli K-12 (4)

Taxonomy

Bacteria (17)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

	Protein (17)
	DNA (8)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (4)
	2.5 - 3.0 (8)
	3.0 - 3.5 (3)

Release Date

	2000 - 2004 (8)
	2005 - 2009 (3)
	2020 - 2024 (6)

Symmetry Type

	Asymmetric (11)
	Cyclic (6)

SCOP Classification

	Alpha and beta proteins (a/b) (5)
	Alpha and beta proteins (a+b) (5)

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1 to 17 of 17 Structures

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1E9R \| pdb_00001e9r	Download File View File

Bacterial conjugative coupling protein TrwBdeltaN70. Trigonal form in complex with sulphate.

Gomis-Rueth, F.X., Moncalian, G., Cabezon, E., de la Cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2001-02-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	CONJUGAL TRANSFER PROTEIN TRWB (protein)
Unique Ligands	SO4

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1E9S \| pdb_00001e9s	Download File View File

Bacterial conjugative coupling protein TrwBdeltaN70. Unbound monoclinic form.

Gomis-Rueth, F.X., Moncalian, G., Cabezon, E., de la Cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2001-02-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	CONJUGAL TRANSFER PROTEIN TRWB (protein)

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1GKI \| pdb_00001gki	Download File View File

Plasmid coupling protein TrwB in complex with ADP and Mg2+.

Gomis-Ruth, F.X., Moncalian, G., De La cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2002-05-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	CONJUGAL TRANSFER PROTEIN TRWB (protein)
Unique Ligands	ADP, EPE, MG

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1GL6 \| pdb_00001gl6	Download File View File

Plasmid coupling protein TrwB in complex with the non-hydrolysable GTP analogue GDPNP

Gomis-Ruth, F.X., Moncalian, G., De La cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2002-05-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	ATPASE (protein)
Unique Ligands	CL, EPE, GNP

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1GL7 \| pdb_00001gl7	Download File View File

Plasmid coupling protein TrwB in complex with the non-hydrolisable ATP-analogue ADPNP.

Gomis-Ruth, F.X., Moncalian, G., De La cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2002-05-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	CONJUGAL TRANSFER PROTEIN TRWB (protein)
Unique Ligands	ANP, CL

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1OMH \| pdb_00001omh	Download File View File

Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.

Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Perez-Luque, R., Gomis-Ruth, F.X., de la Cruz, F., Coll, M.

(2003) Nat Struct Biol 10: 1002-1010

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	trwC protein (protein) DNA OLIGONUCLEOTIDE (nucleic acid)
Unique Ligands	SO4

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1OSB \| pdb_00001osb	Download File View File

Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.

Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Perez-Luque, R., Gomis-Ruth, F.X., de la Cruz, F., Coll, M.

(2003) Nat Struct Biol 10: 1002-1010

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli
Macromolecule	TrwC protein (protein) Dna oligonucleotide (nucleic acid)
Unique Ligands	SO4

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1QX0 \| pdb_00001qx0	Download File View File

CONJUGATIVE RELAXASE TRWC IN COMPLEX WITH ORIT DNA. METAL-BOUND STRUCTURE

Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Prez-Luque, R., Gomis-Rth, F.X., de la Cruz, F., Coll, M.

(2003) Nat Struct Biol 10: 1002-1010

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Escherichia coli
Macromolecule	trwC protein (protein) DNA OLIGONUCLEOTIDE (nucleic acid)
Unique Ligands	SO4, ZN

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1S6M \| pdb_00001s6m	Download File View File

Conjugative Relaxase Trwc In Complex With Orit DNA. Metal-Bound Structure

Guasch, A., Lucas, M., Moncalian, G., Cabezas, M., Perez-Luque, R., Gomis-Ruth, F.X., de la Cruz, F., Coll, M.

(2006) J Mol Biology 358: 857-869

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Escherichia coli
Macromolecule	TrwC (protein) DNA (25-MER) (nucleic acid)
Unique Ligands	NI

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1ZM5 \| pdb_00001zm5	Download File View File

Conjugative Relaxase TRWC in complex with ORIT dna, cooper-bound structure

Boer, R., Russi, S., Guasch, A., Lucas, M., Blanco, A.G., Coll, M., de la Cruz, F.

(2006) J Mol Biology 358: 857-869

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	TrwC (protein) DNA (25-MER) (nucleic acid)
Unique Ligands	CU, SO4

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2CDM \| pdb_00002cdm	Download File View File

The structure of TrwC complexed with a 27-mer DNA comprising the recognition hairpin and the cleavage site

Boer, R., Russi, S., Guasch, A., Lucas, M., Blanco, A.G., Perez-Luque, R., Coll, M., de la Cruz, F.

(2006) J Mol Biology 358: 857

Released	2006-07-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	TRWC (protein) 5'-D(GPCPGPCPAPCPCPGPAPAP APGPGPTPGPCPGPTPAPTPTPGPTPCPTPAP*T)-3' (nucleic acid)
Unique Ligands	SO4

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6I89 \| pdb_00006i89	Download File View File

Crystal structure of Antirestriction ArdC protein from R388 plasmid. Metal-free structure.

Gonzalez-Montes, L., Moncalian, G.

(2020) PLoS Genet 16: e1008750-e1008750

Released	2020-03-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	ArdC protein (protein)
Unique Ligands	MPD

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6SNA \| pdb_00006sna	Download File View File

Crystal structure of Antirestriction ArdC protein from R388 plasmid. Mn(II)-bound structure.

Gonzalez-Montes, L., Moncalian, G.

(2020) PLoS Genet 16: e1008750-e1008750

Released	2020-04-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	ArdC protein (protein)
Unique Ligands	MN

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7BBQ \| pdb_00007bbq	Download File View File

Crystal structure of the HTH DNA binding protein ArdK from R388 plasmid. Apo form.

Fernandez-Lopez, R., Boer, D.R., Moncalian, G.

(2022) Nucleic Acids Res 50: 11938-11947

Released	2022-07-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli K-12
Macromolecule	KORA domain-containing protein (protein)

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7BCA \| pdb_00007bca	Download File View File

Crystal structure of the HTH DNA binding protein ArdK from R388 plasmid bound to a direct-repeat DNA element

Fernandez-Lopez, R., Boer, D.R., Moncalian, G.

(2022) Nucleic Acids Res 50: 11938-11947

Released	2022-07-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12
Macromolecule	KORA domain-containing protein (protein) DNA (5'-D(GPTPAPTPTPGPAPCPAPCPCPTPAPTPTPGPAPCPA)-3') (nucleic acid) DNA (5'-D(TPGPTPCPAPAPTPAPGPGPTPGPTPCPAPAPTPAPC)-3') (nucleic acid)

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7BCB \| pdb_00007bcb	Download File View File

Crystal structure of the HTH DNA binding protein ArdK from R388 plasmid bound to IR3 DNA

Fernandez-Lopez, R., Boer, D.R., Moncalian, G.

(2022) Nucleic Acids Res 50: 11938-11947

Released	2022-01-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12
Macromolecule	KORA domain-containing protein (protein) DNA (5'-D(TPAPAPTPGPTPCPAPAPAPTPAPTPTPGPAPCPA)-3') (nucleic acid) DNA (5'-D(TPGPTPCPAPAPTPAPTPTPTPGPAPCPAPTPTPA)-3') (nucleic acid)

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7PC1 \| pdb_00007pc1	Download File View File

DNA binding domain of partition protein StbA of plasmid R388

Guynet, C., Moncalian, G.

(2022) J Mol Biology 434: 167752-167752

Released	2022-08-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	StbA (protein)

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1E9R | pdb_00001e9r

Bacterial conjugative coupling protein TrwBdeltaN70. Trigonal form in complex with sulphate.

1E9S | pdb_00001e9s

Bacterial conjugative coupling protein TrwBdeltaN70. Unbound monoclinic form.

1GKI | pdb_00001gki

Plasmid coupling protein TrwB in complex with ADP and Mg2+.

1GL6 | pdb_00001gl6

Plasmid coupling protein TrwB in complex with the non-hydrolysable GTP analogue GDPNP

1GL7 | pdb_00001gl7

Plasmid coupling protein TrwB in complex with the non-hydrolisable ATP-analogue ADPNP.

1OMH | pdb_00001omh

Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.

1OSB | pdb_00001osb

Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.

1QX0 | pdb_00001qx0

CONJUGATIVE RELAXASE TRWC IN COMPLEX WITH ORIT DNA. METAL-BOUND STRUCTURE

1S6M | pdb_00001s6m

Conjugative Relaxase Trwc In Complex With Orit DNA. Metal-Bound Structure

1ZM5 | pdb_00001zm5

Conjugative Relaxase TRWC in complex with ORIT dna, cooper-bound structure

2CDM | pdb_00002cdm

The structure of TrwC complexed with a 27-mer DNA comprising the recognition hairpin and the cleavage site

6I89 | pdb_00006i89

Crystal structure of Antirestriction ArdC protein from R388 plasmid. Metal-free structure.

6SNA | pdb_00006sna

Crystal structure of Antirestriction ArdC protein from R388 plasmid. Mn(II)-bound structure.

7BBQ | pdb_00007bbq

Crystal structure of the HTH DNA binding protein ArdK from R388 plasmid. Apo form.

7BCA | pdb_00007bca

Crystal structure of the HTH DNA binding protein ArdK from R388 plasmid bound to a direct-repeat DNA element

7BCB | pdb_00007bcb

Crystal structure of the HTH DNA binding protein ArdK from R388 plasmid bound to IR3 DNA

7PC1 | pdb_00007pc1

DNA binding domain of partition protein StbA of plasmid R388

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1E9R | pdb_00001e9r

1E9S | pdb_00001e9s

1GKI | pdb_00001gki

1GL6 | pdb_00001gl6

1GL7 | pdb_00001gl7

1OMH | pdb_00001omh

1OSB | pdb_00001osb

1QX0 | pdb_00001qx0

1S6M | pdb_00001s6m

1ZM5 | pdb_00001zm5

2CDM | pdb_00002cdm

6I89 | pdb_00006i89

6SNA | pdb_00006sna

7BBQ | pdb_00007bbq

7BCA | pdb_00007bca

7BCB | pdb_00007bcb

7PC1 | pdb_00007pc1