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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = M7G

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Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Homo sapiens (13)
	synthetic construct (9)
	Severe acute respiratory syndrome coronavirus 2 (7)
	Mus musculus (5)
	Influenza B virus (B/Memphis/13/2003) (3)
	Saccharomyces cerevisiae S288C (3)
	Danio rerio (2)
	Human immunodeficiency virus 1 (2)
	Influenza B virus (2)
	Momordica balsamina (2)

More...

Taxonomy

	Eukaryota (29)
	Riboviria (22)
	other sequences (9)
	Varidnaviria (5)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (42)
	ELECTRON MICROSCOPY (7)
	SOLUTION NMR (5)

Polymer Entity Type

	Protein (52)
	RNA (21)

Refinement Resolution (Å)

	1.5 - 2.0 (13)
	2.0 - 2.5 (14)
	2.5 - 3.0 (8)
	3.0 - 3.5 (10)
	3.5 - 4.0 (4)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (5)
	2005 - 2009 (3)
	2010 - 2014 (5)
	2015 - 2019 (18)
	2020 - 2024 (18)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (21)
	Hydrolases (17)
	Lyases (1)

Symmetry Type

	Asymmetric (49)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	Alpha and beta proteins (a/b) (6)
	Artifacts (4)
	Small proteins (2)
	All alpha proteins (1)

AllSelected

1 to 25 of 54 Structures

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1AP8 \| pdb_00001ap8	Download File View File

TRANSLATION INITIATION FACTOR EIF4E IN COMPLEX WITH M7GDP, NMR, 20 STRUCTURES

Matsuo, H., Li, H., Mcguire, A.M., Fletcher, M., Gingras, A.C., Sonenberg, N., Wagner, G.

(1997) Nat Struct Biol 4: 717-724

Released	1998-01-28
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	TRANSLATION INITIATION FACTOR EIF4E (protein)
Unique Ligands	M7G

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1EJ1 \| pdb_00001ej1	Download File View File

COCRYSTAL STRUCTURE OF THE MESSENGER RNA 5' CAP-BINDING PROTEIN (EIF4E) BOUND TO 7-METHYL-GDP

Marcotrigiano, J., Gingras, A.-C., Sonenberg, N., Burley, S.K.

(1997) Cell 89: 951-961

Released	2000-03-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E (protein)
Unique Ligands	M7G

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1EJ4 \| pdb_00001ej4	Download File View File

COCRYSTAL STRUCTURE OF EIF4E/4E-BP1 PEPTIDE

Marcotrigiano, J., Gingras, A.-C., Sonenberg, N., Burley, S.K.

(1999) Mol Cell 3: 707-716

Released	2000-03-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	EUKARYOTIC INITIATION FACTOR 4E (protein) EUKARYOTIC TRANSLATION INITIATION FACTOR 4E BINDING PROTEIN 1 (protein)
Unique Ligands	M7G

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1EJH \| pdb_00001ejh	Download File View File

EIF4E/EIF4G PEPTIDE/7-METHYL-GDP

Marcotrigiano, J., Gingras, A.-C., Sonenberg, N., Burley, S.K.

(1999) Mol Cell 3: 707-716

Released	2000-03-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	EUKARYOTIC INITIATION FACTOR 4E (protein) EUKARYOTIC INITIATION FACTOR 4GII (protein)
Unique Ligands	M7G

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1JTF \| pdb_00001jtf	Download File View File

Crystal Structure Analysis of VP39-F180W mutant and m7GpppG complex

Hu, G., Oguro, A., Gershon, P.D., Quiocho, F.A.

(2002) Biochemistry 41: 7677-7687

Released	2002-07-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Vaccinia virus
Macromolecule	VP39 (protein)
Unique Ligands	M7G, SAH

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1RF8 \| pdb_00001rf8	Download File View File

Solution structure of the yeast translation initiation factor eIF4E in complex with m7GDP and eIF4GI residues 393 to 490

Gross, J.D., Moerke, N.J., von der Haar, T., Lugovskoy, A.A., Sachs, A.B., McCarthy, J.E.G., Wagner, G.

(2003) Cell 115: 739-750

Released	2003-12-23
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Eukaryotic initiation factor 4F subunit p150 (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	M7G, MTN

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1V39 \| pdb_00001v39	Download File View File

DC26 MUTANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE AND M7G(5')PPPG

Hodel, A.E., Gershon, P.D., Quiocho, F.A.

(1997) Nat Struct Biol 4: 350-354

Released	1997-09-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vaccinia virus WR
Macromolecule	VP39 (protein)
Unique Ligands	M7G, SAH

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1XMM \| pdb_00001xmm	Download File View File

Structure of human Dcps bound to m7GDP

Chen, N., Song, H.

(2005) J Mol Biology 347: 707-718

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	heat shock-like protein 1 (protein)
Unique Ligands	G7M, M7G, PO4

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2IDV \| pdb_00002idv	Download File View File

Crystal structure of wheat C113S mutant EIF4E bound TO 7-methyl-GDP

Monzingo, A.F., Dutt-Chaudhuri, A., Sadow, J., Dhaliwal, S., Hoffman, D.W., Robertus, J.D., Browning, K.S.

(2007) Plant Physiol 143: 1504-1518

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Triticum aestivum
Macromolecule	Eukaryotic translation initiation factor 4E-1 (protein)
Unique Ligands	M7G

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2JH8 \| pdb_00002jh8	Download File View File

The structure of bluetongue virus VP4 reveals a multifunctional RNA- capping production-line

Sutton, G., Grimes, J.M., Stuart, D.I., Roy, P.

(2007) Nat Struct Mol Biol 14: 449

Released	2007-04-10
Method	X-RAY DIFFRACTION 3.22 Å
Organisms	Bluetongue virus (serotype 10 / American isolate)
Macromolecule	VP4 CORE PROTEIN (protein)
Unique Ligands	GUN, M7G

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2VP3 \| pdb_00002vp3	Download File View File

DC26 MUTANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE AND M7G(5')PPPG

Hodel, A.E., Gershon, P.D., Quiocho, F.A.

(1997) Nat Struct Biol 4: 350-354

Released	1997-09-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Vaccinia virus WR
Macromolecule	VP39 (protein)
Unique Ligands	M7G, SAH

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3M93 \| pdb_00003m93	Download File View File

Complex crystal structure of Ascaris suum eIF4E-3 with m7G cap

Liu, W., Berkeley Structural Genomics Center (BSGC)

(2011) Nucleic Acids Res 39: 8820-8832

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Ascaris suum Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E-binding protein 1 (protein) Translation initiation factor 4E (protein)
Unique Ligands	M7G

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3Q4P \| pdb_00003q4p	Download File View File

Crystal structure of the complex of type I ribosome inactivating protein with 7n-methyl -8-hydroguanosine-5-p-diphosphate at 1.8 A resolution

Kushwaha, G.S., Yamini, S., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.

To be published

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Momordica balsamina
Macromolecule	Ribosome inactivating protein (protein)
Unique Ligands	GOL, M7G, NAG, PEG

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4B6U \| pdb_00004b6u	Download File View File

Solution structure of eIF4E3 in complex with m7GDP

Osborne, M.J., Volpon, L., Kornblatt, J.A., Culkjovic-Kraljcic, B., Baguet, A., Borden, K.L.B.

(2013) Proc Natl Acad Sci U S A 110: 3877

Released	2013-03-06
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TYPE 3 (protein)
Unique Ligands	M7G

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4EMF \| pdb_00004emf	Download File View File

Crystal structure of the complex of type I Ribosome inactivating protein in complex with 7n-methyl-8-hydroguanosine-5-p-diphosphate at 1.77 A

Yamini, S., Kushwaha, G.S., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.

(2013) Proteins 81: 896-905

Released	2012-05-02
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Momordica balsamina
Macromolecule	rRNA N-glycosidase (protein)
Unique Ligands	GOL, M7G, NAG

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4OR4 \| pdb_00004or4	Download File View File

Structure of Influenza B PB2 cap-binding domain with Q325F mutation complex with m7GDP

Liu, Y., Fan, J., Zheng, X.

(2015) J Biological Chem 290: 9141-9149

Released	2015-02-25
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Influenza B virus
Macromolecule	Polymerase basic protein 2 (protein)
Unique Ligands	M7G

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4TQC \| pdb_00004tqc	Download File View File

The co-complex structure of the translation initiation factor eIF4E with the inhibitor 4EGI-1 reveals an allosteric mechanism for dissociating eIF4G

Papadopoulos, E., Jenni, S., Wagner, G.

(2014) Proc Natl Acad Sci U S A 111: E3187-E3195

Released	2014-08-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	34J, M7G

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5BV3 \| pdb_00005bv3	Download File View File

Yeast Scavenger Decapping Enzyme in complex with m7GDP

Neu, A., Neu, U., Sprangers, R.

(2015) Nat Chem Biol 11: 697-704

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	m7GpppX diphosphatase (protein)
Unique Ligands	CL, M7G, SO4

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5DTO \| pdb_00005dto	Download File View File

Dengue virus full length NS5 complexed with viral Cap 0-RNA and SAH

Zhao, Y., Soh, T.S., Lim, S.P., Chung, K.Y., Swaminathan, K., Vasudevan, S.G., Shi, P.-Y., Lescar, J., Luo, D.

(2015) Proc Natl Acad Sci U S A 112: 14834-14839

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.603 Å
Organisms	Dengue virus dengue virus type 3
Macromolecule	NS5 (protein) RNA (5'-R(PAPGPUPU)-3') (nucleic acid)
Unique Ligands	ACT, M7G, MG, SAH, ZN

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5F98 \| pdb_00005f98	Download File View File

Crystal structure of RIG-I in complex with Cap-0 RNA

Wang, C., Marcotrigiano, J., Miller, M., Jiang, F.

(2016) Proc Natl Acad Sci U S A 113: 596-601

Released	2016-01-13
Method	X-RAY DIFFRACTION 3.28 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Probable ATP-dependent RNA helicase DDX58 (protein) RNA (5'-R(PGPAPAPUPAPUPAPAPUPAPGPUPGPAPUPAPUPUPAPUPAPUPUPC)-3') (nucleic acid)
Unique Ligands	M7G, MG, ZN

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5H1M \| pdb_00005h1m	Download File View File

Crystal structure of WD40 repeat domains of Gemin5 in complex with M7G

Jin, W., Wang, Y., Liu, C.P., Yang, N., Jin, M., Cong, Y., Wang, M., Xu, R.M.

(2016) Genes Dev 30: 2391-2403

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.492 Å
Organisms	Homo sapiens
Macromolecule	Gem-associated protein 5 (protein)
Unique Ligands	M7G

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5KQS \| pdb_00005kqs	Download File View File

Structure of NS5 methyltransferase from Zika virus bound to S-adenosylmethionine and 7-methyl-guanosine-5'-diphosphate

Coloma, J., Jain, R., Rajashankar, K.R., Aggarwal, A.K.

(2016) Cell Rep 16: 3097-3102

Released	2016-09-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Zika virus
Macromolecule	Methyltransferase (protein)
Unique Ligands	ACT, GOL, M7G, PO4, SAM

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5LOP \| pdb_00005lop	Download File View File

Structure of the active form of /K. lactis/ Dcp1-Dcp2-Edc3 decapping complex bound to m7GDP

Charenton, C., Taverniti, V., Gaudon-Plesse, C., Back, R., Seraphin, B., Graille, M.

(2016) Nat Struct Mol Biol 23: 982-986

Released	2016-10-05
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	KLLA0A11308p (protein) KLLA0E01827p (protein) KLLA0F23980p (protein)
Unique Ligands	M7G, MG

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5ME6 \| pdb_00005me6	Download File View File

Crystal Structure of eiF4E from C. melo bound to a CAP analog

Querol-Audi, J., Silva, C., Miras, M., Aranda-Regules, M., Verdaguer, N.

(2017) Plant Physiol 174: 1476-1491

Released	2017-08-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Cucumis melo
Macromolecule	Eukaryotic transcription initiation factor 4E (protein)
Unique Ligands	M7G

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5MSG \| pdb_00005msg	Download File View File

Influenza B polymerase bound to vRNA promoter and capped RNA primer

Cusack, S., Guilligay, D.

(2017) Nucleic Acids Res 45: 3353-3368

Released	2017-02-08
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Influenza B virus synthetic construct
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 3
Unique Ligands	PO4

1 to 25 of 54 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AP8 | pdb_00001ap8

1EJ1 | pdb_00001ej1

1EJ4 | pdb_00001ej4

1EJH | pdb_00001ejh

1JTF | pdb_00001jtf

1RF8 | pdb_00001rf8

1V39 | pdb_00001v39

1XMM | pdb_00001xmm

2IDV | pdb_00002idv

2JH8 | pdb_00002jh8

2VP3 | pdb_00002vp3

3M93 | pdb_00003m93

3Q4P | pdb_00003q4p

4B6U | pdb_00004b6u

4EMF | pdb_00004emf

4OR4 | pdb_00004or4

4TQC | pdb_00004tqc

5BV3 | pdb_00005bv3

5DTO | pdb_00005dto

5F98 | pdb_00005f98

5H1M | pdb_00005h1m

5KQS | pdb_00005kqs

5LOP | pdb_00005lop

5ME6 | pdb_00005me6

5MSG | pdb_00005msg