RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Streptococcus agalactiae NEM316"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

Streptococcus agalactiae NEM316 (19)

Taxonomy

Bacteria (19)

Experimental Method

X-RAY DIFFRACTION (19)

Polymer Entity Type

	Protein (19)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (9)
	2.5 - 3.0 (2)

Release Date

	2010 - 2014 (8)
	2015 - 2019 (7)
	2020 - 2024 (4)

Enzyme Classification Name

	Oxidoreductases (3)
	Hydrolases (2)
	Transferases (1)

Symmetry Type

	Cyclic (11)
	Asymmetric (5)
	Dihedral (6)

SCOP Classification

	All alpha proteins (3)
	Alpha and beta proteins (a/b) (2)
	Artifacts (1)

AllSelected

1 to 19 of 19 Structures

Page 1 of 1

Sort by

Explore in 3D

3O9O \| pdb_00003o9o	Download File View File

Crystal Structure of GBS1074, an Esat-6 homologue from Group B Streptococcus

White, S.A., Shukla, A., Anthony, M.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 1421-1425

Released	2010-11-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Uncharacterized protein gbs1074 (protein)

Explore in 3D

3VXD \| pdb_00003vxd	Download File View File

Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae

Nakamichi, Y., Maruyama, Y., Mikami, B., Hashimoto, W., Murata, K.

To be published

Released	2012-10-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Putative uncharacterized protein gbs1889 (protein)
Unique Ligands	SO4

Explore in 3D

3WUX \| pdb_00003wux	Download File View File

Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae

Nakamichi, Y., Oiki, S., Mikami, B., Murata, K., Hashimoto, W.

To be published

Released	2014-05-28
Method	X-RAY DIFFRACTION 1.792 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Unsaturated chondroitin disaccharide hydrolase (protein)
Unique Ligands	EDO

Explore in 3D

4MBO \| pdb_00004mbo	Download File View File

1.65 Angstrom Crystal Structure of Serine-rich Repeat Adhesion Glycoprotein (Srr1) from Streptococcus agalactiae

Minasov, G., Shuvalova, L., Dubrovska, I., Winsor, J., Seo, H.S., Seepersaud, R., Doran, K.S., Iverson, T.M., Sullam, P.M., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2013) J Biological Chem 288: 35982-35996

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Serine-rich Repeat Adhesion Glycoprotein (Srr1) (protein)
Unique Ligands	BME, CA, MES

Explore in 3D

4QX6 \| pdb_00004qx6	Download File View File

CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM STREPTOCOCCUS AGALACTIAE NEM316 at 2.46 ANGSTROM RESOLUTION

Ayres, C.A., Schormann, N., Banerjee, S., Chattopadhyay, D.

(2014) Acta Crystallogr F Struct Biol Commun 70: 1333-1339

Released	2014-10-15
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Glyceraldehyde 3-phosphate dehydrogenase (protein)
Unique Ligands	EDO, NAD

Explore in 3D

4RMB \| pdb_00004rmb	Download File View File

Crystal structure of keratin 4 binding domain of surface adhesin Srr-1 of S.agalactiae

Ponnuraj, K., Sundaresan, R.

(2015) Int J Biol Macromol 75C: 97-105

Released	2015-02-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Serine rich repeat protein-1 (Srr-1) (protein)

Explore in 3D

4TKZ \| pdb_00004tkz	Download File View File

Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae

Nakamichi, Y., Maruyama, Y., Oiki, S., Mikami, B., Murata, K., Hashimoto, W.

To be published

Released	2014-08-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Putative uncharacterized protein gbs1890 (protein)
Unique Ligands	GOL

Explore in 3D

4U8E \| pdb_00004u8e	Download File View File

Crystal structure of 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase from Streptococcus agalactiae

Maruyama, y., Oiki, S., Takase, R., Mikami, B., Murata, K., Hashimoto, W.

(2015) J Biological Chem 290: 6281-6292

Released	2015-01-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Putative uncharacterized protein gbs1892 (protein)

Explore in 3D

4U8F \| pdb_00004u8f	Download File View File

Crystal structure of 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase complexed with a tartrate

Maruyama, Y., Oiki, S., Takase, R., Mikami, B., Murata, K., Hashimoto, W.

(2015) J Biological Chem 290: 6281-6292

Released	2014-12-24
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Putative uncharacterized protein gbs1892 (protein)
Unique Ligands	TLA

Explore in 3D

4U8G \| pdb_00004u8g	Download File View File

Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Streptococcus agalactiae

Maruyama, Y., Oiki, S., Takase, R., Mikami, B., Murata, K., Hashimoto, W.

(2015) J Biological Chem 290: 6281-6292

Released	2014-12-24
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Putative uncharacterized protein gbs1891 (protein)

Explore in 3D

5DZ8 \| pdb_00005dz8	Download File View File

Streptococcus agalactiae AgI/II polypeptide BspA variable (V) domain

Rego, S., Till, M., Race, P.R.

(2016) J Biological Chem 291: 15985-16000

Released	2016-06-22
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	BspA (BspA_V) (protein)
Unique Ligands	ACT, EDO, PEG

Explore in 3D

5DZ9 \| pdb_00005dz9	Download File View File

Streptococcus agalactiae AgI/II polypeptide BspA C-terminal domain (Mut)

Rego, S., Till, M., Race, P.R.

(2016) J Biological Chem 291: 15985-16000

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	BspA (protein)

Explore in 3D

5DZA \| pdb_00005dza	Download File View File

Streptococcus agalactiae AgI/II polypeptide BspA C terminal domain (WT)

Rego, S., Till, M., Race, P.R.

(2016) J Biological Chem 291: 15985-16000

Released	2016-06-22
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	BspA (protein)
Unique Ligands	EDO, PEG

Explore in 3D

5Y37 \| pdb_00005y37	Download File View File

Crystal structure of GBS GAPDH

Jin, T., Zhou, K.

(2018) Acta Crystallogr F Struct Biol Commun 74: 236-244

Released	2018-04-18
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Glyceraldehyde-3-phosphate dehydrogenase (protein)
Unique Ligands	NAD, SO4

Explore in 3D

6IEP \| pdb_00006iep	Download File View File

GAPDH of Streptococcus agalactiae

Ponnuraj, K., Nagarajan, R.

(2018) Microb Pathog 127: 359-367

Released	2019-01-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Glyceraldehyde-3-phosphate dehydrogenase (protein)

Explore in 3D

7DVR \| pdb_00007dvr	Download File View File

Crystal structure of heme sensor protein PefR from Streptococcus agalactiae in complex with heme

Nishinaga, M., Nagai, S., Nishitani, Y., Sugimoto, H., Shiro, Y., Sawai, H.

(2021) Commun Biol 4: 467-467

Released	2021-09-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	HTH marR-type domain-containing protein (protein)
Unique Ligands	CO, HEM

Explore in 3D

7DVT \| pdb_00007dvt	Download File View File

Crystal structure of heme sensor protein PefR in complex with heme and carbon monoxide

Nishinaga, M., Nagai, S., Nishitani, Y., Sugimoto, H., Shiro, Y., Sawai, H.

(2021) Commun Biol 4: 467-467

Released	2021-09-29
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	HTH marR-type domain-containing protein (protein)
Unique Ligands	CMO, HEM

Explore in 3D

7DVU \| pdb_00007dvu	Download File View File

Crystal structure of heme sensor protein PefR in complex with heme and cyanide

Nishinaga, M., Nagai, S., Nishitani, Y., Sugimoto, H., Shiro, Y., Sawai, H.

(2021) Commun Biol 4: 467-467

Released	2021-09-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	HTH marR-type domain-containing protein (protein)
Unique Ligands	CYN, HEM

Explore in 3D

7DVV \| pdb_00007dvv	Download File View File

Heme sensor protein PefR from Streptococcus agalactiae bound to operator DNA (28-mer)

Nishinaga, M., Nagai, S., Nishitani, Y., Sugimoto, H., Shiro, Y., Sawai, H.

(2021) Commun Biol 4: 467-467

Released	2021-09-29
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	HTH marR-type domain-containing protein (protein) DNA (28-MER) (nucleic acid)

1 to 19 of 19 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3O9O | pdb_00003o9o

Crystal Structure of GBS1074, an Esat-6 homologue from Group B Streptococcus

3VXD | pdb_00003vxd

Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae

3WUX | pdb_00003wux

Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae

4MBO | pdb_00004mbo

1.65 Angstrom Crystal Structure of Serine-rich Repeat Adhesion Glycoprotein (Srr1) from Streptococcus agalactiae

4QX6 | pdb_00004qx6

CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM STREPTOCOCCUS AGALACTIAE NEM316 at 2.46 ANGSTROM RESOLUTION

4RMB | pdb_00004rmb

Crystal structure of keratin 4 binding domain of surface adhesin Srr-1 of S.agalactiae

4TKZ | pdb_00004tkz

Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae

4U8E | pdb_00004u8e

Crystal structure of 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase from Streptococcus agalactiae

4U8F | pdb_00004u8f

Crystal structure of 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase complexed with a tartrate

4U8G | pdb_00004u8g

Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Streptococcus agalactiae

5DZ8 | pdb_00005dz8

Streptococcus agalactiae AgI/II polypeptide BspA variable (V) domain

5DZ9 | pdb_00005dz9

Streptococcus agalactiae AgI/II polypeptide BspA C-terminal domain (Mut)

5DZA | pdb_00005dza

Streptococcus agalactiae AgI/II polypeptide BspA C terminal domain (WT)

5Y37 | pdb_00005y37

Crystal structure of GBS GAPDH

6IEP | pdb_00006iep

GAPDH of Streptococcus agalactiae

7DVR | pdb_00007dvr

Crystal structure of heme sensor protein PefR from Streptococcus agalactiae in complex with heme

7DVT | pdb_00007dvt

Crystal structure of heme sensor protein PefR in complex with heme and carbon monoxide

7DVU | pdb_00007dvu

Crystal structure of heme sensor protein PefR in complex with heme and cyanide

7DVV | pdb_00007dvv

Heme sensor protein PefR from Streptococcus agalactiae bound to operator DNA (28-mer)

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3O9O | pdb_00003o9o

3VXD | pdb_00003vxd

3WUX | pdb_00003wux

4MBO | pdb_00004mbo

4QX6 | pdb_00004qx6

4RMB | pdb_00004rmb

4TKZ | pdb_00004tkz

4U8E | pdb_00004u8e

4U8F | pdb_00004u8f

4U8G | pdb_00004u8g

5DZ8 | pdb_00005dz8

5DZ9 | pdb_00005dz9

5DZA | pdb_00005dza

5Y37 | pdb_00005y37

6IEP | pdb_00006iep

7DVR | pdb_00007dvr

7DVT | pdb_00007dvt

7DVU | pdb_00007dvu

7DVV | pdb_00007dvv