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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 1.6.3

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Homo sapiens (23)
	Mus musculus (13)
	Streptococcus pyogenes (3)
	Oryctolagus cuniculus (2)
	Pseudomonas savastanoi pv. phaseolicola 1448A (2)
	Oryza sativa Japonica Group (1)
	Pseudomonas savastanoi pv. phaseolicola (1)
	Pseudomonas syringae pv. tomato (1)
	Vicugna pacos (1)

Taxonomy

	Eukaryota (32)
	Bacteria (7)

Experimental Method

	X-RAY DIFFRACTION (20)
	ELECTRON MICROSCOPY (16)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (3)
	2.0 - 2.5 (9)
	2.5 - 3.0 (10)
	3.0 - 3.5 (8)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (11)
	2010 - 2014 (2)
	2015 - 2019 (8)
	2020 - 2024 (18)

Enzyme Classification Name

	Oxidoreductases (39)
	Hydrolases (2)

Membrane Protein Annotation

	PDBTM (14)
	MemProtMD (7)
	OPM (7)
	mpstruc (6)

Symmetry Type

	Asymmetric (26)
	Cyclic (14)

SCOP Classification

	Artifacts (3)
	All alpha proteins (3)
	Alpha and beta proteins (a/b) (1)
	Small proteins (1)

AllSelected

1 to 25 of 39 Structures

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1WYL \| pdb_00001wyl	Download File View File

Solution structure of the CH domain of human NEDD9 interacting protein with calponin homology and LIM domains

Tomizawa, T., Kigawa, T., Koshiba, S., Inoue, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-08-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NEDD9 interacting protein with calponin homology and LIM domains (protein)

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2BC0 \| pdb_00002bc0	Download File View File

Structural Analysis of Streptococcus pyogenes NADH oxidase: Wild-type Nox

Boles, W.H., Mallett, T.C.

(2015) Biochemistry 54: 6815-6829

Released	2006-10-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus pyogenes
Macromolecule	NADH Oxidase (protein)
Unique Ligands	FAD

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2BC1 \| pdb_00002bc1	Download File View File

Structural Analysis of Streptococcus pyogenes NADH oxidase: C44S Nox

Boles, W.H., Mallett, T.C.

(2015) Biochemistry 54: 6815-6829

Released	2006-10-31
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Streptococcus pyogenes
Macromolecule	NADH Oxidase (protein)
Unique Ligands	FAD

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2BCP \| pdb_00002bcp	Download File View File

Structural Analysis of Streptococcus pyogenes NADH oxidase: C44S Nox with Azide

Boles, W.H., Mallett, T.C.

(2015) Biochemistry 54: 6815-6829

Released	2006-10-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus pyogenes
Macromolecule	NADH Oxidase (protein)
Unique Ligands	AZI, FAD

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2BRA \| pdb_00002bra	Download File View File

Structure of N-Terminal FAD Binding motif of mouse MICAL

Nadella, M., Bianchet, M.A., Gabelli, S.B., Amzel, L.M.

(2005) Proc Natl Acad Sci U S A 102: 16830-16835

Released	2005-11-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	NEDD9 INTERACTING PROTEIN WITH CALPONIN HOMOLOGY AND LIM DOMAINS (protein)
Unique Ligands	CL, FAD

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2BRY \| pdb_00002bry	Download File View File

Crystal structure of the native monooxygenase domain of MICAL at 1.45 A resolution

Siebold, C., Berrow, N., Walter, T.S., Harlos, K., Owens, R.J., Terman, J.R., Stuart, D.I., Kolodkin, A.L., Pasterkamp, R.J., Jones, E.Y.

(2005) Proc Natl Acad Sci U S A 102: 16836

Released	2005-10-26
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Mus musculus
Macromolecule	NEDD9 INTERACTING PROTEIN WITH CALPONIN HOMOLOGY AND LIM DOMAINS (protein)
Unique Ligands	CL, FAD, GOL, SO4

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2C4C \| pdb_00002c4c	Download File View File

Crystal structure of the NADPH-treated monooxygenase domain of MICAL

Siebold, C., Berrow, N., Walter, T.S., Harlos, K., Owens, R.J., Terman, J.R., Stuart, D.I., Kolodkin, A.L., Pasterkamp, R.J., Jones, E.Y.

(2005) Proc Natl Acad Sci U S A 102: 16836

Released	2005-10-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus
Macromolecule	NEDD9-INTERACTING PROTEIN WITH CALPONIN HOMOLOGY AND LIM DOMAINS (protein)
Unique Ligands	CL, FAD

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2CO8 \| pdb_00002co8	Download File View File

Solution structures of the LIM domain of human NEDD9 interacting protein with calponin homology and LIM domains

Sato, M., Tomizawa, T., Saito, K., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-11-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NEDD9 interacting protein with calponin homology and LIM domains (protein)
Unique Ligands	ZN

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2DK9 \| pdb_00002dk9	Download File View File

Solution structure of Calponin Homology domain of Human MICAL-1

Sun, H., Dai, H., Zhang, J., Xiong, S., Wu, J., Shi, Y.

(2006) J Biomol NMR 36: 295-300

Released	2006-09-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NEDD9-interacting protein with calponin homology and LIM domains (protein)

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3A1F \| pdb_00003a1f	Download File View File

The crystal structure of NADPH binding domain of gp91(phox)

Honbou, K.

To be published

Released	2010-04-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Cytochrome b-245 heavy chain (protein)
Unique Ligands	NI

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3A8R \| pdb_00003a8r	Download File View File

The structure of the N-terminal regulatory domain of a plant NADPH oxidase

Oda, T., Hashimoto, H., Kuwabara, N., Akashi, S., Hayashi, K., Kojima, C., Wong, H.L., Kawasaki, T., Shimamoto, K., Sato, M., Shimizu, T.

(2010) J Biological Chem 285: 1435-1445

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	CA

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3KKJ \| pdb_00003kkj	Download File View File

X-ray structure of P. syringae q888a4 Oxidoreductase at resolution 2.5A, Northeast Structural Genomics Consortium target PsR10

Kuzin, A.P., Chen, Y., Forouhar, F., Vorobiev, S., Acton, T., Ma, L.C., Xiao, R., Montelione, G.T., Hunt, J.F., Tong, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2009-11-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas syringae pv. tomato
Macromolecule	Amine oxidase, flavin-containing (protein)
Unique Ligands	FAD

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3QJ4 \| pdb_00003qj4	Download File View File

Crystal structure of Human Renalase (isoform 1)

Milani, M., Ciriello, F., Baroni, S., Pandini, V., Aliverti, A., Canevari, G., Bolognesi, M.

(2011) J Mol Biology 411: 463-473

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Renalase (protein)
Unique Ligands	FAD, SO4

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4TXI \| pdb_00004txi	Download File View File

Construct of MICAL-1 containing the monooxygenase and calponin homology domains

Alqassim, S.S., Amzel, L.M., Bianchet, M.A.

(2016) Sci Rep 6: 22176-22176

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.309 Å
Organisms	Mus musculus
Macromolecule	Protein-methionine sulfoxide oxidase MICAL1 (protein)
Unique Ligands	CL, FAD, PEG

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4TXK \| pdb_00004txk	Download File View File

Construct of MICAL-1 containing the monooxygenase and calponin homology domains

Alqassim, S.S., Amzel, L.M., Bianchet, M.A.

To be published

Released	2015-12-23
Method	X-RAY DIFFRACTION 2.878 Å
Organisms	Mus musculus
Macromolecule	Protein-methionine sulfoxide oxidase MICAL1 (protein)
Unique Ligands	FAD, PEG

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4ZCC \| pdb_00004zcc	Download File View File

Renalase in complex with NADH

Silvaggi, N.R., Moran, G.R., Roman, J.V.

(2015) Biochemistry 54: 3791-3802

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.997 Å
Organisms	Pseudomonas savastanoi pv. phaseolicola 1448A
Macromolecule	Renalase (protein)
Unique Ligands	FAD, FMT, NAI

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4ZCD \| pdb_00004zcd	Download File View File

Renalase in complex with NAD+

Silvaggi, N.R., Moran, G.R., Roman, J.V.

(2015) Biochemistry 54: 3791-3802

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.6605 Å
Organisms	Pseudomonas savastanoi pv. phaseolicola 1448A
Macromolecule	Renalase (protein)
Unique Ligands	FAD, FMT, NAD

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5KRQ \| pdb_00005krq	Download File View File

Renalase in complex with NADPH

Silvaggi, N.R., Moran, G.R., Roman, J.V.

(2016) Arch Biochem Biophys 612: 46-56

Released	2016-11-02
Method	X-RAY DIFFRACTION 2.086 Å
Organisms	Pseudomonas savastanoi pv. phaseolicola
Macromolecule	Renalase (protein)
Unique Ligands	FAD, NDP

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5LE0 \| pdb_00005le0	Download File View File

MICAL1 Cterminal domain

Hammich, H., Pylypenko, O., Houdusse, A.

(2017) Nat Commun 8: 14528-14528

Released	2017-03-01
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Protein-methionine sulfoxide oxidase MICAL1 (protein)

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5LPN \| pdb_00005lpn	Download File View File

Structure of human Rab10 in complex with the bMERB domain of Mical-1

Rai, A., Oprisko, A., Campos, J., Fu, Y., Friese, T., Itzen, A., Goody, R.S., Mueller, M.P., Gazdag, E.M.

(2016) Elife 5:

Released	2016-08-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Protein-methionine sulfoxide oxidase MICAL1 (protein) Ras-related protein Rab-10 (protein)
Unique Ligands	GNP, MG

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6KU0 \| pdb_00006ku0	Download File View File

Crystal structure of MyoVa-GTD in complex with MICAL1-GTBM

Niu, F., Wei, Z.

(2020) Sci Adv 6:

Released	2020-09-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Peptide from [F-actin]-monooxygenase MICAL1 (protein) Unconventional myosin-Va (protein)
Unique Ligands	EDO

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6SZ5 \| pdb_00006sz5	Download File View File

Human calmodulin bound to a peptide of human NADPH oxidase 5

Millana, E., Mattevi, A.

(2020) FEBS J 287: 2486-2503

Released	2019-12-11
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	Calmodulin-2 (protein) NADPH oxidase 5 (protein)
Unique Ligands	CA

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6WXR \| pdb_00006wxr	Download File View File

CryoEM structure of mouse DUOX1-DUOXA1 complex in the absence of NADPH

Sun, J.

(2020) Nat Struct Mol Biol 27: 1086-1093

Released	2020-09-02
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Mus musculus
Macromolecule	Dual oxidase 1 (protein) Dual oxidase maturation factor 1 (protein)
Unique Ligands	FAD, HEM, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6WXU \| pdb_00006wxu	Download File View File

CryoEM structure of mouse DUOX1-DUOXA1 complex in the dimer-of-dimer state

Sun, J.

(2020) Nat Struct Mol Biol 27: 1086-1093

Released	2020-09-02
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Mus musculus
Macromolecule	Dual oxidase 1 (protein) Dual oxidase maturation factor 1 (protein)
Unique Ligands	HEC, NAG, PLC, PX2
Unique branched monosaccharides	BMA, MAN, NAG

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6WXV \| pdb_00006wxv	Download File View File

CryoEM structure of mouse DUOX1-DUOXA1 complex in the presence of NADPH

Sun, J.

(2020) Nat Struct Mol Biol 27: 1086-1093

Released	2020-09-02
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Mus musculus
Macromolecule	Dual oxidase 1 (protein) Dual oxidase maturation factor 1 (protein)
Unique Ligands	CA, FAD, HEB, NAG, NDP, PLC
Unique branched monosaccharides	BMA, MAN, NAG

1 to 25 of 39 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1WYL | pdb_00001wyl

2BC0 | pdb_00002bc0

2BC1 | pdb_00002bc1

2BCP | pdb_00002bcp

2BRA | pdb_00002bra

2BRY | pdb_00002bry

2C4C | pdb_00002c4c

2CO8 | pdb_00002co8

2DK9 | pdb_00002dk9

3A1F | pdb_00003a1f

3A8R | pdb_00003a8r

3KKJ | pdb_00003kkj

3QJ4 | pdb_00003qj4

4TXI | pdb_00004txi

4TXK | pdb_00004txk

4ZCC | pdb_00004zcc

4ZCD | pdb_00004zcd

5KRQ | pdb_00005krq

5LE0 | pdb_00005le0

5LPN | pdb_00005lpn

6KU0 | pdb_00006ku0

6SZ5 | pdb_00006sz5

6WXR | pdb_00006wxr

6WXU | pdb_00006wxu

6WXV | pdb_00006wxv