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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 9541387

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Search Summary

This query matches 366 Structures.

Refinements

Structure Determination Methodology

experimental (366)

Scientific Name of Source Organism

	Homo sapiens (366)
	synthetic construct (12)
	Rattus norvegicus (4)
	Lama glama (2)
	Saccharolobus solfataricus (2)
	Spodoptera exigua (2)
	Escherichia phage T7 (1)
	Saccharomyces cerevisiae (1)

Taxonomy

	Eukaryota (366)
	other sequences (12)
	Eukaryota (eukaryotes) (4)
	Archaea (2)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (329)
	SOLUTION NMR (28)
	ELECTRON MICROSCOPY (9)

Polymer Entity Type

Protein (366)

Refinement Resolution (Å)

	1.0 - 1.5 (84)
	1.5 - 2.0 (146)
	2.0 - 2.5 (70)
	2.5 - 3.0 (24)
	3.0 - 3.5 (10)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (1)
	2010 - 2014 (30)
	2015 - 2019 (109)
	2020 - 2024 (199)
	2025 - 2029 (23)

Enzyme Classification Name

	Hydrolases (355)
	Transferases (21)
	Isomerases (31)

Membrane Protein Annotation

mpstruc (1)

Symmetry Type

	Asymmetric (343)
	Cyclic (22)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (156)
	Artifacts (83)
	All alpha proteins (11)
	All beta proteins (6)
	Alpha and beta proteins (a+b) (6)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 366 Structures

Page 1 of 15

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Explore in 3D

1D8D \| pdb_00001d8d	Download File View File

CO-CRYSTAL STRUCTURE OF RAT PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A K-RAS4B PEPTIDE SUBSTRATE AND FPP ANALOG AT 2.0A RESOLUTION

Long, S.B., Casey, P.J., Beese, L.S.

(2000) Structure 8: 209-222

Released	2000-02-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	K-RAS4B PEPTIDE SUBSTRATE (protein) farnesyltransferase (alpha subunit) (protein) farnesyltransferase (beta subunit) (protein)
Unique Ligands	ACT, FII, ZN

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1D8E \| pdb_00001d8e	Download File View File

Zinc-depleted FTase complexed with K-RAS4B peptide substrate and FPP analog.

Long, S.B., Casey, P.J., Beese, L.S.

(2000) Structure 8: 209-222

Released	2000-03-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	FARNESYLTRANSFERASE (ALPHA SUBUNIT) (protein) FARNESYLTRANSFERASE (BETA SUBUNIT) (protein) K-RAS4B PEPTIDE SUBSTRATE (protein)
Unique Ligands	ACT, FII

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1KZO \| pdb_00001kzo	Download File View File

PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH FARNESYLATED K-RAS4B PEPTIDE PRODUCT AND FARNESYL DIPHOSPHATE SUBSTRATE BOUND SIMULTANEOUSLY

Long, S.B., Casey, P.J., Beese, L.S.

(2002) Nature 419: 645-650

Released	2002-10-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Farnesylated K-Ras4B peptide product (protein) Protein Farnesyltransferase alpha subunit (protein) Protein Farnesyltransferase beta subunit (protein)
Unique Ligands	ACY, FAR, FPP, ZN

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1KZP \| pdb_00001kzp	Download File View File

PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A FARNESYLATED K-RAS4B PEPTIDE PRODUCT

Long, S.B., Casey, P.J., Beese, L.S.

(2002) Nature 419: 645-650

Released	2002-10-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Farnesylated K-Ras4B peptide product (protein) Protein Farnesyltransferase alpha subunit (protein) Protein Farnesyltransferase beta subunit (protein)
Unique Ligands	ACY, FAR, ZN

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2MSC \| pdb_00002msc	Download File View File

NMR data-driven model of GTPase KRas-GDP tethered to a lipid-bilayer nanodisc

Mazhab-Jafari, M., Stathopoulos, P., Marshall, C., Ikura, M.

(2015) Proc Natl Acad Sci U S A 112: 6625-6630

Released	2015-06-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apolipoprotein A-I (protein) GTPase KRas (protein)
Unique Ligands	17F, GDP, MG, PCW

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2MSD \| pdb_00002msd	Download File View File

NMR data-driven model of GTPase KRas-GNP tethered to a lipid-bilayer nanodisc

Mazhab-Jafari, M., Stathopoulos, P., Marshall, C., Ikura, M.

(2015) Proc Natl Acad Sci U S A 112: 6625-6630

Released	2015-06-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apolipoprotein A-I (protein) GTPase KRas (protein)
Unique Ligands	17F, GNP, MG, PCW

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2MSE \| pdb_00002mse	Download File View File

NMR data-driven model of GTPase KRas-GNP:ARafRBD complex tethered to a lipid-bilayer nanodisc

Mazhab-Jafari, M., Stathopoulos, P., Marshall, C., Ikura, M.

(2015) Proc Natl Acad Sci U S A 112: 6625-6630

Released	2015-06-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Apolipoprotein A-I (protein) GTPase KRas (protein) Serine/threonine-protein kinase A-Raf (protein)
Unique Ligands	17F, GNP, MG, PCW

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3GFT \| pdb_00003gft	Download File View File

Human K-Ras (Q61H) in complex with a GTP analogue

Tong, Y., Tempel, W., Shen, L., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2009-03-10
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	CIT, GNP, MG, UNX

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4DSN \| pdb_00004dsn	Download File View File

Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity

Oh, A., Maurer, T., Garrenton, L.S., Pitts, K., Anderson, D.J., Skelton, N.J., Fauber, B.P., Pan, B., Malek, S., Stokoe, D., Ludlam, M., Bowman, K.K., Wu, J., Giannetti, A.M., Starovasnik, M.A., Mellman, I., Jackson, P.K., Ruldolph, J., Fang, G., Wang, W.

(2012) Proc Natl Acad Sci U S A 109: 5299-5304

Released	2012-04-25
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas, isoform 2B (protein)
Unique Ligands	EDO, GCP, MG

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4DSO \| pdb_00004dso	Download File View File

Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity

(2012) Proc Natl Acad Sci U S A 109: 5299-5304

Released	2012-04-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas, isoform 2B (protein)
Unique Ligands	BEN, GOL, GSP, MG

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4DST \| pdb_00004dst	Download File View File

Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity

(2012) Proc Natl Acad Sci U S A 109: 5299-5304

Released	2012-04-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas, isoform 2B (protein)
Unique Ligands	9LI, ACT, DMS, EDO, GCP, GOL, MG

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4DSU \| pdb_00004dsu	Download File View File

Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity

(2012) Proc Natl Acad Sci U S A 109: 5299-5304

Released	2012-04-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas, isoform 2B (protein)
Unique Ligands	BZI, GDP, MG

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4EPR \| pdb_00004epr	Download File View File

Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-Mediated Activation.

Sun, Q., Burke, J.P., Phan, J., Burns, M.C., Olejniczak, E.T., Waterson, A.G., Lee, T., Rossanese, O.W., Fesik, S.W.

(2012) Angew Chem Int Ed Engl 51: 6140-6143

Released	2012-05-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	GDP, MG

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4EPT \| pdb_00004ept	Download File View File

Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-mediated Activation

Sun, Q., Burke, J.P., Phan, J., Burns, M.C., Olejniczak, E.T., Waterson, A.G., Lee, T., Rossanese, O.W., Fesik, S.W.

(2012) Angew Chem Int Ed Engl 51: 6140-6143

Released	2012-05-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	0QW, GDP, MG

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4EPV \| pdb_00004epv	Download File View File

Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-mediated Activation

Sun, Q., Burke, J.P., Phan, J., Burns, M.C., Olejniczak, E.T., Waterson, A.G., Lee, T., Rossanese, O.W., Fesik, S.W.

(2012) Angew Chem Int Ed Engl 51: 6140-6143

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	0QX, GDP, MG

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4EPW \| pdb_00004epw	Download File View File

Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-mediated Activation

Sun, Q., Burke, J.P., Phan, J., Burns, M.C., Olejniczak, E.T., Waterson, A.G., Lee, T., Rossanese, O.W., Fesik, S.W.

(2012) Angew Chem Int Ed Engl 51: 6140-6143

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	0QV, GDP, MG

Explore in 3D

4EPX \| pdb_00004epx	Download File View File

Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-mediated Activation

Sun, Q., Burke, J.P., Phan, J., Burns, M.C., Olejniczak, E.T., Waterson, A.G., Lee, T., Rossanese, O.W., Fesik, S.W.

(2012) Angew Chem Int Ed Engl 51: 6140-6143

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	0QR, GDP, MG

Explore in 3D

4EPY \| pdb_00004epy	Download File View File

Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-mediated Activation

Sun, Q., Burke, J.P., Phan, J., Burns, M.C., Olejniczak, E.T., Waterson, A.G., Lee, T., Rossanese, O.W., Fesik, S.W.

(2012) Angew Chem Int Ed Engl 51: 6140-6143

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.801 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	0QY, GDP, MG

Explore in 3D

4L8G \| pdb_00004l8g	Download File View File

Crystal Structure of K-Ras G12C, GDP-bound

Ostrem, J.M., Peters, U., Sos, M.L., Wells, J.A., Shokat, K.M.

(2013) Nature 503: 548-551

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.521 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	GDP, MG, NA

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4LDJ \| pdb_00004ldj	Download File View File

Crystal Structure of a GDP-bound G12C Oncogenic Mutant of Human GTPase KRas

Hunter, J.C., Gurbani, D., Chen, Z., Westover, K.D.

(2014) Proc Natl Acad Sci U S A 111: 8895-8900

Released	2014-06-04
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	GDP, MG

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4LPK \| pdb_00004lpk	Download File View File

Crystal Structure of K-Ras WT, GDP-bound

Ostrem, J.M., Peters, U., Sos, M.L., Wells, J.A., Shokat, K.M.

(2013) Nature 503: 548-551

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	CA, GDP, NA

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4LRW \| pdb_00004lrw	Download File View File

Crystal Structure of K-Ras G12C (cysteine-light), GDP-bound

Ostrem, J.M., Peters, U., Sos, M.L., Wells, J.A., Shokat, K.M.

(2013) Nature 503: 548-551

Released	2013-11-27
Method	X-RAY DIFFRACTION 2.151 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	GDP, MG

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4LUC \| pdb_00004luc	Download File View File

Crystal Structure of small molecule disulfide 6 bound to K-Ras G12C

Ostrem, J.M., Peters, U., Sos, M.L., Wells, J.A., Shokat, K.M.

(2013) Nature 503: 548-551

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	20G, CA, GDP

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4LV6 \| pdb_00004lv6	Download File View File

Crystal Structure of small molecule disulfide 4 covalently bound to K-Ras G12C

Ostrem, J.M., Peters, U., Sos, M.L., Wells, J.A., Shokat, K.M.

(2013) Nature 503: 548-551

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	20H, CA, GDP

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4LYF \| pdb_00004lyf	Download File View File

Crystal Structure of small molecule vinylsulfonamide 8 covalently bound to K-Ras G12C

Ostrem, J.M., Peters, U., Sos, M.L., Wells, J.A., Shokat, K.M.

(2013) Nature 503: 548-551

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.568 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein)
Unique Ligands	21C, GDP

1 to 25 of 366 Structures

Page 1 of 15

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1D8D | pdb_00001d8d

1D8E | pdb_00001d8e

1KZO | pdb_00001kzo

1KZP | pdb_00001kzp

2MSC | pdb_00002msc

2MSD | pdb_00002msd

2MSE | pdb_00002mse

3GFT | pdb_00003gft

4DSN | pdb_00004dsn

4DSO | pdb_00004dso

4DST | pdb_00004dst

4DSU | pdb_00004dsu

4EPR | pdb_00004epr

4EPT | pdb_00004ept

4EPV | pdb_00004epv

4EPW | pdb_00004epw

4EPX | pdb_00004epx

4EPY | pdb_00004epy

4L8G | pdb_00004l8g

4LDJ | pdb_00004ldj

4LPK | pdb_00004lpk

4LRW | pdb_00004lrw

4LUC | pdb_00004luc

4LV6 | pdb_00004lv6

4LYF | pdb_00004lyf