7ALL
A single sulfatase is required for metabolism of colonic mucin O-glycans and intestinal colonization by a symbiotic human gut bacterium (BT4683-S1_4)
- PDB DOI: https://doi.org/10.2210/pdb7ALL/pdb
- Classification: HYDROLASE
- Organism(s): Bacteroides thetaiotaomicron VPI-5482
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 2020-10-06 Released: 2021-10-13 
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.63 Å
- R-Value Free: 0.200 
- R-Value Work: 0.174 
wwPDB Validation   3D Report Full Report
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Arylsulfatase | A [auth AAA] | 523 | Bacteroides thetaiotaomicron VPI-5482 | Mutation(s): 1  Gene Names: BT_4683 | |
UniProt | |||||
Find proteins for Q89YP8 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)) Explore Q89YP8  Go to UniProtKB:  Q89YP8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q89YP8 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
IOD Query on IOD | D [auth AAA], E [auth AAA], F [auth AAA], G [auth AAA] | IODIDE ION I XMBWDFGMSWQBCA-UHFFFAOYSA-M | |||
CA Query on CA | C [auth AAA] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900019 Query on PRD_900019 | B [auth A] | N-acetyl-alpha-lactosamine | Oligosaccharide / Glycan component |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.63 Å
- R-Value Free: 0.200 
- R-Value Work: 0.174 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 55.136 | α = 90 |
b = 87.799 | β = 90 |
c = 101.833 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
xia2 | data reduction |
xia2 | data scaling |
BALBES | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-10-13  Deposition Author(s): Sofia de Jesus Vaz Luis, A., Martens, E.C., Basle, A., Cartmell, A.
Funding Organization | Location | Grant Number |
---|---|---|
Wellcome Trust | United Kingdom | SBF0051065163470 |
Revision History (Full details and data files)
- Version 1.0: 2021-10-13
Type: Initial release - Version 1.1: 2021-11-03
Changes: Data collection, Database references - Version 1.2: 2024-01-31
Changes: Data collection, Derived calculations, Refinement description