7ANA
A single sulfatase is required for metabolism of colonic mucin O-glycans and intestinal colonization by a symbiotic human gut bacterium (BT1622-S1_20)
- PDB DOI: https://doi.org/10.2210/pdb7ANA/pdb
- Classification: HYDROLASE
- Organism(s): Bacteroides thetaiotaomicron VPI-5482
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2020-10-11 Released: 2021-11-10 
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.235 
- R-Value Work: 0.211 
wwPDB Validation   3D Report Full Report
This is version 1.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
N-acetylgalactosamine-6-sulfatase | A [auth AAA], B [auth BBB] | 503 | Bacteroides thetaiotaomicron VPI-5482 | Mutation(s): 0  Gene Names: BT_1622 | |
UniProt | |||||
Find proteins for Q8A7A3 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)) Explore Q8A7A3  Go to UniProtKB:  Q8A7A3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8A7A3 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NGA Query on NGA | E [auth BBB] | 2-acetamido-2-deoxy-beta-D-galactopyranose C8 H15 N O6 OVRNDRQMDRJTHS-JAJWTYFOSA-N | |||
A2G (Subject of Investigation/LOI) Query on A2G | C [auth AAA], G [auth BBB] | 2-acetamido-2-deoxy-alpha-D-galactopyranose C8 H15 N O6 OVRNDRQMDRJTHS-CBQIKETKSA-N | |||
EDO Query on EDO | F [auth BBB] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CA Query on CA | D [auth AAA], H [auth BBB] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.235 
- R-Value Work: 0.211 
- Space Group: P 43 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 83.246 | α = 90 |
b = 83.246 | β = 90 |
c = 390.341 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
xia2 | data reduction |
xia2 | data scaling |
PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-11-10  Deposition Author(s): Sofia de Jesus Vaz Luis, A., Basle, A., Martens, E.C., Cartmell, A.
Funding Organization | Location | Grant Number |
---|---|---|
Wellcome Trust | United Kingdom | SBF0051065163470 |
Revision History (Full details and data files)
- Version 1.0: 2021-11-10
Type: Initial release