7EKO

CrClpP-S1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.1 of the entry. See complete history


Literature

The cryo-EM structure of the chloroplast ClpP complex.

Wang, N.Wang, Y.Zhao, Q.Zhang, X.Peng, C.Zhang, W.Liu, Y.Vallon, O.Schroda, M.Cong, Y.Liu, C.

(2021) Nat Plants 7: 1505-1515

  • DOI: https://doi.org/10.1038/s41477-021-01020-x
  • Primary Citation of Related Structures:  
    7EKO, 7EKQ

  • PubMed Abstract: 

    Protein homoeostasis in plastids is strategically regulated by the protein quality control system involving multiple chaperones and proteases, among them the Clp protease. Here, we determined the structure of the chloroplast ClpP complex from Chlamydomonas reinhardtii by cryo-electron microscopy. ClpP contains two heptameric catalytic rings without any symmetry. The top ring contains one ClpR6, three ClpP4 and three ClpP5 subunits while the bottom ring is composed of three ClpP1 C subunits and one each of the ClpR1-4 subunits. ClpR3, ClpR4 and ClpT4 subunits connect the two rings and stabilize the complex. The chloroplast Cpn11/20/23 co-chaperonin, a co-factor of Cpn60, forms a cap on the top of ClpP by protruding mobile loops into hydrophobic clefts at the surface of the top ring. The co-chaperonin repressed ClpP proteolytic activity in vitro. By regulating Cpn60 chaperone and ClpP protease activity, the co-chaperonin may play a role in coordinating protein folding and degradation in the chloroplast.


  • Organizational Affiliation

    State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent Clp protease proteolytic subunit238Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8INX1 (Chlamydomonas reinhardtii)
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UniProt GroupA8INX1
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent Clp protease proteolytic subunit
B, D, F
238Chlamydomonas reinhardtiiMutation(s): 0 
EC: 3.4.21.92
UniProt
Find proteins for A8IL21 (Chlamydomonas reinhardtii)
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UniProt GroupA8IL21
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent Clp protease proteolytic subunit
C, E, G
296Chlamydomonas reinhardtiiMutation(s): 0 
EC: 3.4.21.92
UniProt
Find proteins for A8IJ60 (Chlamydomonas reinhardtii)
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UniProt GroupA8IJ60
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent Clp protease proteolytic subunit
H, J, M
208Chlamydomonas reinhardtiiMutation(s): 0 
EC: 3.4.21.92
UniProt
Find proteins for P42380 (Chlamydomonas reinhardtii)
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UniProt GroupP42380
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent Clp protease proteolytic subunit246Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3CXW8 (Chlamydomonas reinhardtii)
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent Clp protease proteolytic subunit251Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IXD6 (Chlamydomonas reinhardtii)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent Clp protease proteolytic subunit250Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IS47 (Chlamydomonas reinhardtii)
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent Clp protease proteolytic subunit383Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IH07 (Chlamydomonas reinhardtii)
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-dependent Clp protease ATP-binding subunit CLPT4, chloroplastic180Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8J353 (Chlamydomonas reinhardtii)
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UniProt GroupA8J353
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-20
    Type: Initial release
  • Version 1.1: 2022-05-04
    Changes: Database references