7NXP

Structure of the C-terminal domain of the pUL77 capsid protein from human cytomegalovirus (HCMV)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.192 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Assembly of infectious Kaposis sarcoma-associated herpesvirus (KSHV) progeny requires formation of a pentameric pORF19 portal cap

Naniima, P.Naimo, E.Koch, S.Curth, U.Alkharsah, K.R.Stroeh, L.J.Binz, A.Boening, H.Borst, E.M.Desai, P.Bohne, J.Messerle, M.Bauerfeind, R.Legrand, P.Sodeik, B.Schulz, T.F.Krey, T.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Capsid vertex component 2A479Human betaherpesvirus 5Mutation(s): 0 
Gene Names: CVC2
UniProt
Find proteins for A0A3G6XKK5 (Human cytomegalovirus)
Explore A0A3G6XKK5 
Go to UniProtKB:  A0A3G6XKK5
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
B [auth A], C [auth A]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.192 
  • Space Group: P 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 163.907α = 90
b = 163.907β = 90
c = 50.965γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Federal Ministry for Education and ResearchGermanyGerman Center for Infection Research (DZIF) - TTU 07.704

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-13
    Type: Initial release