Macromolecule Content

Total Structure Weight: 41.28 kDa
Atom Count: 3347
Modelled Residue Count: 352
Deposited Residue Count: 374
Unique protein chains: 1

7WYO

Structure of the EV71 3Cpro with 338 inhibitor

PDB DOI: 10.2210/pdb7WYO/pdb

Classification: VIRAL PROTEIN
Organism(s): Enterovirus A71
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2022-02-16 Released: 2022-06-22
Deposition Author(s): Qin, B., Hou, P., Gao, X., Cui, S.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free: 0.198
R-Value Work: 0.184
R-Value Observed: 0.184

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Acrylamide fragment inhibitors that induce unprecedented conformational distortions in enterovirus 71 3C and SARS-CoV-2 main protease

Qin, B., Craven, G.B., Hou, P., Chesti, J., Lu, X., Child, E.S., Morgan, R.M.L., Niu, W., Zhao, L., Armstrong, A., Mann, D.J., Cui, S.

(2022) Acta Pharm Sin B

DOI: 10.1016/j.apsb.2022.06.002

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3C protein	A, B	187	Enterovirus A71	Mutation(s): 1
UniProt
Find proteins for E7E815 (Human enterovirus 71) Explore E7E815 Go to UniProtKB: E7E815
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	E7E815
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
G7F (Subject of Investigation/LOI) Query on G7F Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A]	C [auth A]	N-methyl-N-(4,5,6,7-tetrahydro-1,3-benzothiazol-2-ylmethyl)prop-2-enamide C₁₂ H₁₆ N₂ O S YJZOYCOTGFHVFV-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free: 0.198
R-Value Work: 0.184
R-Value Observed: 0.184
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.721	α = 90
b = 70.697	β = 90
c = 85.394	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Deposited Date: 2022-02-16
Released Date: 2022-06-22

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	81772207

Revision History (Full details and data files)

Version 1.0: 2022-06-22
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.