8Q5I

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.45 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structural characterization of cephaeline binding to the eukaryotic ribosome using Cryo-Electron Microscopy

Kolosova, O., Zgadzay, Y., Stetsenko, A., Atamas, A., Wu, C., Jenner, L., Sachs, S.M., Guskov, A., Yusupov, M.

To be published.

Macromolecules

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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L2-BE [auth j]254Candida albicansMutation(s): 0 
Gene Names: RPL2B, FOB64_005652
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Find proteins for A0A8H6F1X9 (Candida albicans)
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L3F [auth k]389Candida albicansMutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L4-BG [auth l]363Candida albicansMutation(s): 0 
Gene Names: RPL4B, FOB64_003235
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L5H [auth m]298Candida albicansMutation(s): 0 
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L6I [auth n]176Candida albicansMutation(s): 0 
Gene Names: rpl16
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L7-AJ [auth o]241Candida albicansMutation(s): 0 
Gene Names: RPL7A, FOB64_006178
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Find proteins for A0A8H6BVN2 (Candida albicans)
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L8K [auth p]262Candida albicansMutation(s): 0 
Gene Names: RPL8B, FOB64_000245
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Find proteins for A0A8H6C337 (Candida albicans)
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L9-BL [auth q]191Candida albicansMutation(s): 0 
Gene Names: RPL9B, FOB64_000511
UniProt
Find proteins for A0A8H6C3N3 (Candida albicans)
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L10M [auth r]220Candida albicansMutation(s): 0 
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L11-BN [auth s]174Candida albicansMutation(s): 0 
Gene Names: RPL11B, FOB64_005262
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Find proteins for A0A8H6F1S5 (Candida albicans)
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L13O [auth t]202Candida albicansMutation(s): 0 
Gene Names: RPL13, FOB64_002488
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L14-BP [auth u]131Candida albicansMutation(s): 0 
Gene Names: RPL14B, FOB64_003123
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L15-AQ [auth v]204Candida albicansMutation(s): 0 
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal protein L13R [auth w]200Candida albicansMutation(s): 0 
Gene Names: FOB64_002221
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Find proteins for A0A8H6BZ56 (Candida albicans)
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal protein L22S [auth x]185Candida albicansMutation(s): 0 
Gene Names: FOB64_005064
UniProt
Find proteins for A0A8H6BUG0 (Candida albicans)
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Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L18-AT [auth y]186Candida albicansMutation(s): 0 
Gene Names: RPL18A, FOB64_000263
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Find proteins for A0A8H6C4Y1 (Candida albicans)
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Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L19-AU [auth z]190Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PK40 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L20V [auth 0]172Candida albicansMutation(s): 0 
Gene Names: RPL20B, FOB64_002651
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Find proteins for A0A8H6BZJ3 (Candida albicans)
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Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L21-AW [auth 2]160Candida albicansMutation(s): 0 
Gene Names: RPL21A, FOB64_004971
UniProt
Find proteins for A0A8H6F1C8 (Candida albicans)
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Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L22-BX [auth 5]124Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PM41 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L23-AY [auth 6]137Candida albicansMutation(s): 0 
Gene Names: RPL23A, FOB64_001970
UniProt
Find proteins for A0A8H6C444 (Candida albicans)
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Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L24-AZ [auth 7]155Candida albicansMutation(s): 0 
Gene Names: RPL24A, FOB64_001216
UniProt
Find proteins for A0A8H6C4U1 (Candida albicans)
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Entity ID: 27
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60S ribosomal protein L25AA [auth 8]142Candida albicansMutation(s): 0 
Gene Names: RPL25, FOB64_001980
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Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal protein L24BA [auth 9]127Candida albicansMutation(s): 0 
Gene Names: FOB64_002422
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Entity ID: 29
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60S ribosomal protein L27CA [auth AA]136Candida albicansMutation(s): 0 
Gene Names: RPL27
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Find proteins for Q9P843 (Candida albicans)
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Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L28DA [auth AB]149Candida albicansMutation(s): 0 
Gene Names: RPL28, FOB64_004519
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Find proteins for A0A8H6BVY8 (Candida albicans)
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Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L29EA [auth AC]63Candida albicansMutation(s): 0 
Gene Names: RPL29, FOB64_005654
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Entity ID: 32
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60S ribosomal protein L30FA [auth AD]106Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PM75 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L31-BGA [auth AE]112Candida albicansMutation(s): 0 
Gene Names: RPL31B, FOB64_005135
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Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L32HA [auth AF]131Candida albicansMutation(s): 0 
Gene Names: RPL32, Ca20C1.21c
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Find proteins for O94008 (Candida albicans)
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Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L33-AIA [auth AG]107Candida albicansMutation(s): 0 
Gene Names: RPL33A, FOB64_005161
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Find proteins for A0A8H6BW57 (Candida albicans)
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Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L34-BJA [auth AH]122Candida albicansMutation(s): 0 
Gene Names: RPL34B, FOB64_006064
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Entity ID: 37
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Ribosomal protein L29KA [auth AI]120Candida albicansMutation(s): 0 
Gene Names: FOB64_000276
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Entity ID: 38
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60S ribosomal protein L36LA [auth AJ]99Candida albicansMutation(s): 0 
Gene Names: RPL36, RPL39
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Entity ID: 39
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60S ribosomal protein L37-BMA [auth AK]90Candida albicansMutation(s): 0 
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Find proteins for A0A1D8PF45 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 40
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60S ribosomal protein L38NA [auth AL]78Candida albicansMutation(s): 0 
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Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L39OA [auth AM]51Candida albicansMutation(s): 0 
Gene Names: RPL39
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Entity ID: 42
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60S ribosomal protein L40-BPA [auth AN]52Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PL68 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L41QA [auth AO]25Candida albicansMutation(s): 0 
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Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L42-BRA [auth AP]106Candida albicansMutation(s): 0 
Gene Names: RPL42B, FOB64_005717
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Find proteins for A0A8H6BR69 (Candida albicans)
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Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L43-ASA [auth AQ]92Candida albicansMutation(s): 0 
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Find proteins for A0A1D8PP14 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S0UA [auth B]261Candida albicansMutation(s): 0 
Gene Names: RPS0, FOB64_000229
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Find proteins for A0A8H6C395 (Candida albicans)
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Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S1VA [auth C]256Candida albicansMutation(s): 0 
Gene Names: RPS1, FOB64_002493
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Entity ID: 49
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Ribosomal protein S5WA [auth D]249Candida albicansMutation(s): 0 
Gene Names: FOB64_002335, FOB64_002811
UniProt
Find proteins for A0A8H6BZ90 (Candida albicans)
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Entity ID: 50
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Ribosomal protein S3XA [auth E]251Candida albicansMutation(s): 0 
Gene Names: FOB64_004345
UniProt
Find proteins for A0A8H6BYS1 (Candida albicans)
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Entity ID: 51
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40S ribosomal protein S4YA [auth F]262Candida albicansMutation(s): 0 
UniProt
Find proteins for A0A1D8PCI6 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 52
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal protein S7ZA [auth G]225Candida albicansMutation(s): 0 
Gene Names: FOB64_006628
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Entity ID: 53
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40S ribosomal protein S6AB [auth H]236Candida albicansMutation(s): 0 
Gene Names: RPS6A, FOB64_002680
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Entity ID: 54
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40S ribosomal protein S7BB [auth I]186Candida albicansMutation(s): 0 
Gene Names: RPS7A, FOB64_000613
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Entity ID: 55
MoleculeChainsSequence LengthOrganismDetailsImage
40S ribosomal protein S8CB [auth J]206Candida albicansMutation(s): 0 
Gene Names: FOB64_005152
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Entity ID: 56
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Ribosomal protein S4DB [auth K]189Candida albicansMutation(s): 0 
Gene Names: FOB64_004972
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Entity ID: 57
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40S ribosomal protein S10-AEB [auth L]118Candida albicansMutation(s): 0 
Gene Names: RPS10A, FOB64_005376
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Entity ID: 58
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40S ribosomal protein S11AFB [auth M]155Candida albicansMutation(s): 0 
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Find proteins for A0A1D8PN83 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 59
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40S ribosomal protein S13GB [auth O]151Candida albicansMutation(s): 0 
Gene Names: RPS13, FOB64_002094
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Entity ID: 60
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40S ribosomal protein S14-AHB [auth P]132Candida albicansMutation(s): 0 
Gene Names: RPS14A, FOB64_006106
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Entity ID: 61
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40S ribosomal protein S15IB [auth Q]142Candida albicansMutation(s): 0 
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Entity ID: 62
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40S ribosomal protein S16JB [auth R]142Candida albicansMutation(s): 0 
Gene Names: RPS16, Ca49C10.01c
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Entity ID: 63
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40S ribosomal protein S17-BKB [auth S]137Candida albicansMutation(s): 0 
Gene Names: RPS17B, FOB64_005668
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Find proteins for A0A8H6BTR7 (Candida albicans)
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Entity ID: 64
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40S ribosomal protein S18-BLB [auth T]145Candida albicansMutation(s): 0 
Gene Names: RPS18B, FOB64_003436
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Entity ID: 65
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40S ribosomal protein S19-AMB [auth U]145Candida albicansMutation(s): 0 
Gene Names: RPS19A, FOB64_000253
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Entity ID: 66
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Ribosomal protein S10NB [auth V]119Candida albicansMutation(s): 0 
Gene Names: FOB64_004041
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Entity ID: 67
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40S ribosomal protein S21OB [auth W]87Candida albicansMutation(s): 0 
Gene Names: RPS21
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Entity ID: 68
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40S ribosomal protein S22-APB [auth X]130Candida albicansMutation(s): 0 
Gene Names: RPS22A, FOB64_006105, FOB64_006386
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Entity ID: 69
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Ribosomal protein S23 (S12)QB [auth Y]145Candida albicansMutation(s): 0 
Gene Names: FOB64_006094
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Entity ID: 70
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40S ribosomal protein S24RB [auth Z]135Candida albicansMutation(s): 0 
Gene Names: RPS24B, FOB64_000750
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Entity ID: 71
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40S ribosomal protein S26SB [auth b]119Candida albicansMutation(s): 0 
Gene Names: RPS26A, FOB64_004760
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Entity ID: 72
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40S ribosomal protein S27TB [auth c]82Candida albicansMutation(s): 0 
Gene Names: RPS27B, FOB64_004082
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Entity ID: 73
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40S ribosomal protein S28-BUB [auth d]67Candida albicansMutation(s): 0 
Gene Names: RPS28B, FOB64_003462
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Entity ID: 74
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40S ribosomal protein S29AVB [auth e]56Candida albicansMutation(s): 0 
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Find proteins for A0A1D8PTR4 (Candida albicans (strain SC5314 / ATCC MYA-2876))
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Entity ID: 75
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40S ribosomal protein S30WB [auth f]63Candida albicansMutation(s): 0 
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Entity ID: 1
MoleculeChainsLengthOrganismImage
25S rRNAA [auth 1]3,359Candida albicans
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Entity ID: 2
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5SB [auth 3]121Candida albicans
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Entity ID: 3
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5.8S rRNAC [auth 4]158Candida albicans
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Entity ID: 4
MoleculeChainsLengthOrganismImage
Mixture of endogenous E-tRNAsD [auth 10]14Candida albicans
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Entity ID: 46
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18S ribosomal RNATA [auth A]1,787Candida albicans
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Entity ID: 76
MoleculeChainsLengthOrganismImage
DNA (5'-R(P*GP*GP*CP*AP*G)-3')XB [auth g]5synthetic construct
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Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K16 (Subject of Investigation/LOI)
Query on K16
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AC [auth 1],
NM [auth A],
ZB [auth 1]		(1~{R})-1-[[(2~{S},3~{R},11~{b}~{S})-3-ethyl-9,10-dimethoxy-2,3,4,6,7,11~{b}-hexahydro-1~{H}-benzo[a]quinolizin-2-yl]methyl]-7-methoxy-1,2,3,4-tetrahydroisoquinolin-6-ol
C28 H38 N2 O4
DTGZHCFJNDAHEN-OZEXIGSWSA-N		 Ligand Interaction
SPK
Query on SPK
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YB [auth 1]SPERMINE (FULLY PROTONATED FORM)
C10 H30 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-R		 Ligand Interaction
SPD
Query on SPD
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BC [auth 1]SPERMIDINE
C7 H19 N3
ATHGHQPFGPMSJY-UHFFFAOYSA-N		 Ligand Interaction
ZN
Query on ZN
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IM [auth AK]
JM [auth AN]
KM [auth AP]
KQ [auth b]
LQ [auth c]
IM [auth AK],
JM [auth AN],
KM [auth AP],
KQ [auth b],
LQ [auth c],
MM [auth AQ],
MQ [auth e]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N		 Ligand Interaction
MG
Query on MG
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