8QVN | pdb_00008qvn

Cryo-EM structure of Cx26 from Gallus Gallus in bicarbonate buffer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.07 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Multiple carbamylation events are required for differential modulation of Cx26 hemichannels and gap junctions by CO 2 .

Nijjar, S.Brotherton, D.Butler, J.Dospinescu, V.M.Gannon, H.G.Linthwaite, V.Cann, M.Cameron, A.Dale, N.

(2025) J Physiol 603: 1071-1089

  • DOI: https://doi.org/10.1113/JP285885
  • Primary Citation of Related Structures:  
    8QVN

  • PubMed Abstract: 

    CO 2 directly modifies the gating of connexin26 (Cx26) gap junction channels and hemichannels. This gating depends upon Lys125, and the proposed mechanism involves carbamylation of Lys125 to allow formation of a salt bridge with Arg104 on the neighbouring subunit. We demonstrate via carbamate trapping and tandem mass spectrometry that five Lys residues within the cytoplasmic loop, including Lys125, are indeed carbamylated by CO 2 . The cytoplasmic loop appears to provide a chemical microenvironment that facilitates carbamylation. Systematic mutation of these Lys residues to Arg shows that only carbamylation of Lys125 is essential for hemichannel opening. By contrast, carbamylation of Lys108 and Lys125 is essential for gap junction closure to CO 2 . Chicken (Gallus gallus) Cx26 gap junction channels lack Lys108 and do not close to CO 2 , as shown by both a dye transfer assay and a high-resolution cryogenic electron microscopy structure. The mutation Lys108Arg prevents CO 2 -dependent gap junction channel closure in human Cx26. Our findings directly demonstrate carbamylation in connexins, provide further insight into the differential action of CO 2 on Cx26 hemichannels and gap junction channels, and increase support for the role of the N-terminus in gating the Cx26 channel. KEY POINTS: Direct evidence of carbamylation of multiple lysine residues in the cytoplasmic loop of Cx26. Concentration-dependent carbamylation at lysines 108, 122 and 125. Only carbamylation of lysine 125 is essential for hemichannel opening to CO 2 . Carbamylation of lysine 108 along with lysine 125 is essential for CO 2 -dependent gap junction channel closure.


  • Organizational Affiliation

    School of Life Sciences, University of Warwick, Coventry, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gap junction protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
225Gallus gallusMutation(s): 0 
Gene Names: GJB2
Membrane Entity: Yes 
UniProt
Find proteins for E1C2J9 (Gallus gallus)
Explore E1C2J9 
Go to UniProtKB:  E1C2J9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE1C2J9
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PTY
Query on PTY

Download Ideal Coordinates CCD File 
AA [auth D]
BB [auth K]
CB [auth K]
DA [auth E]
EA [auth E]
AA [auth D],
BB [auth K],
CB [auth K],
DA [auth E],
EA [auth E],
GB [auth L],
HB [auth L],
IA [auth F],
JA [auth F],
LA [auth G],
MA [auth G],
N [auth A],
O [auth A],
PA [auth H],
QA [auth H],
R [auth B],
S [auth B],
TA [auth I],
UA [auth I],
V [auth C],
W [auth C],
XA [auth J],
YA [auth J],
Z [auth D]
PHOSPHATIDYLETHANOLAMINE
C40 H80 N O8 P
NJGIRBISCGPRPF-KXQOOQHDSA-N
LMT
Query on LMT

Download Ideal Coordinates CCD File 
AB [auth K]
BA [auth D]
CA [auth E]
DB [auth K]
EB [auth L]
AB [auth K],
BA [auth D],
CA [auth E],
DB [auth K],
EB [auth L],
FA [auth E],
FB [auth L],
GA [auth F],
HA [auth F],
KA [auth G],
M [auth A],
NA [auth G],
OA [auth H],
P [auth A],
Q [auth B],
RA [auth H],
SA [auth I],
T [auth B],
U [auth C],
VA [auth I],
WA [auth J],
X [auth C],
Y [auth D],
ZA [auth J]
DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.07 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMR/P010393/1
Leverhulme TrustUnited KingdomRPG-2015-090

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-30
    Type: Initial release
  • Version 1.1: 2024-11-20
    Changes: Data collection
  • Version 1.2: 2025-02-19
    Changes: Data collection, Database references
  • Version 1.3: 2025-03-12
    Changes: Data collection, Database references