Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Hnin, S.Y.Y., Nakashima, Y., Kodama, T., Morita, H.(2024) ACS Catal : 11865-11880
Experimental Data Snapshot
Starting Model: experimental
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(2024) ACS Catal : 11865-11880
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
O-methyltransferase family protein | 242 | Lycoris aurea | Mutation(s): 0  EC: 2.1.1.336 | ||
UniProt | |||||
Find proteins for A0A6B9TNK2 (Lycoris longituba) Explore A0A6B9TNK2  Go to UniProtKB:  A0A6B9TNK2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A6B9TNK2 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SAH (Subject of Investigation/LOI) Query on SAH | D [auth A], I [auth B] | S-ADENOSYL-L-HOMOCYSTEINE C14 H20 N6 O5 S ZJUKTBDSGOFHSH-WFMPWKQPSA-N | |||
H6N (Subject of Investigation/LOI) Query on H6N | J [auth B] | Protocatechuic aldehyde C7 H6 O3 IBGBGRVKPALMCQ-UHFFFAOYSA-N | |||
TRS (Subject of Investigation/LOI) Query on TRS | G [auth B] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O | |||
GOL (Subject of Investigation/LOI) Query on GOL | E [auth A], F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
MG (Subject of Investigation/LOI) Query on MG | C [auth A], H [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 49.373 | α = 90 |
b = 81.091 | β = 90 |
c = 116.77 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Japan Society for the Promotion of Science (JSPS) | Japan | JP22H02777 |
Japan Society for the Promotion of Science (JSPS) | Japan | JP22K15303 |