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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Dendraspis polylepis polylepis"

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Dendraspis polylepis polylepis (19)
	Homo sapiens (5)

Taxonomy

Eukaryota (19)

Experimental Method

	SOLUTION NMR (8)
	X-RAY DIFFRACTION (8)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (2)
	2010 - 2014 (2)
	2015 - 2019 (4)
	2020 - 2024 (6)
	2025 - 2029 (1)

Membrane Protein Annotation

	PDBTM (3)
	mpstruc (3)
	OPM (2)
	MemProtMD (1)

Symmetry Type

	Asymmetric (15)
	Dihedral (3)
	Cyclic (2)

SCOP Classification

Small proteins (7)

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1 to 19 of 19 Structures

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1DEM \| pdb_00001dem	Download File View File

PROTEINASE INHIBITOR HOMOLOGUES AS POTASSIUM CHANNEL BLOCKERS

Lancelin, J.-M., Foray, M.-F.

(1994) Nat Struct Biol 1: 246-250

Released	1994-05-31
Method	SOLUTION NMR
Organisms	Dendraspis polylepis polylepis
Macromolecule	DENDROTOXIN I (protein)

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1DEN \| pdb_00001den	Download File View File

PROTEINASE INHIBITOR HOMOLOGUES AS POTASSIUM CHANNEL BLOCKERS

Lancelin, J.-M., Foray, M.-F.

(1994) Nat Struct Biol 1: 246-250

Released	1994-05-31
Method	SOLUTION NMR
Organisms	Dendraspis polylepis polylepis
Macromolecule	DENDROTOXIN I (protein)

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1DTK \| pdb_00001dtk	Download File View File

THE NMR SOLUTION STRUCTURE OF DENDROTOXIN K FROM THE VENOM OF DENDROASPIS POLYLEPIS POLYLEPIS

Berndt, K., Guntert, P., Wuthrich, K.

(1993) J Mol Biology 234: 735-750

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Dendraspis polylepis polylepis
Macromolecule	DENDROTOXIN K (protein)

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1IMT \| pdb_00001imt	Download File View File

MAMBA INTESTINAL TOXIN 1, NMR, 39 STRUCTURES

Boisbouvier, J., Albrand, J.-P., Blackledge, M., Jaquinod, M., Schweitz, H., Lazdunski, M., Marion, D.

(1998) J Mol Biology 283: 205-219

Released	1999-04-20
Method	SOLUTION NMR
Organisms	Dendraspis polylepis polylepis
Macromolecule	INTESTINAL TOXIN 1 (protein)

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1NTX \| pdb_00001ntx	Download File View File

SECONDARY STRUCTURE DETERMINATION FOR ALPHA-NEUROTOXIN FROM DENDROASPIS POLYLEPIS POLYLEPIS BASED ON SEQUENCE SPECIFIC PROTON NUCLEAR MAGNETIC RESONANCE ASSIGNMENTS

Brown, L.R., Wuthrich, K.

(1988) Eur J Biochem 177: 295-305

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Dendraspis polylepis polylepis
Macromolecule	ALPHA-NEUROTOXIN (protein)

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1TFS \| pdb_00001tfs	Download File View File

NMR AND RESTRAINED MOLECULAR DYNAMICS STUDY OF THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF TOXIN FS2, A SPECIFIC BLOCKER OF THE L-TYPE CALCIUM CHANNEL, ISOLATED FROM BLACK MAMBA VENOM

Albrand, J.-P., Blackledge, M.J., Pascaud, F., Hollecker, M., Marion, D.

(1995) Biochemistry 34: 5923-5937

Released	1995-03-31
Method	SOLUTION NMR
Organisms	Dendraspis polylepis polylepis
Macromolecule	TOXIN FS2 (protein)

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2MFA \| pdb_00002mfa	Download File View File

Mambalgin-2

Schroeder, C.I., Rash, L.D., Vila-Farres, X., Rosengren, K.J., Mobli, M., King, G.F., Alewood, P.F., Craik, D.J., Durek, T.

(2014) Angew Chem Int Ed Engl 53: 1017-1020

Released	2014-01-01
Method	SOLUTION NMR
Organisms	Dendraspis polylepis polylepis
Macromolecule	Mambalgin-2 (protein)

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2MJY \| pdb_00002mjy	Download File View File

Solution structure of synthetic Mamba-1 peptide

He, Y., Wu, F., Tian, C.

(2014) Chem Commun (Camb) 50: 5837-5839

Released	2015-01-28
Method	SOLUTION NMR
Organisms	Dendraspis polylepis polylepis
Macromolecule	Mambalgin-1 (protein)

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4LFT \| pdb_00004lft	Download File View File

Structure of alpha-elapitoxin-Dpp2d isolated from Black Mamba (Dendroaspis polylepis) venom

Wang, C.I.A., Reeks, T., Lewis, R.J., Alewood, P.F., Durek, T.

(2014) Biochemistry 53: 3758-3766

Released	2014-06-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Dendraspis polylepis polylepis
Macromolecule	Alpha-elapitoxin-Dpp2a (protein)

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5DO6 \| pdb_00005do6	Download File View File

Crystal structure of Dendroaspis polylepis venom mambalgin-1 T23A mutant

Stura, E.A., Tepshi, L., Kessler, P., Gilles, M., Servent, D.

(2016) J Biological Chem 291: 2616-2629

Released	2015-12-30
Method	X-RAY DIFFRACTION 1.697 Å
Organisms	Dendraspis polylepis polylepis
Macromolecule	Mambalgin-1 (protein)
Unique Ligands	EDO, IOD, PGO

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5DU1 \| pdb_00005du1	Download File View File

Crystal structure of Dendroaspis polylepis mambalgin-1 wild-type in P21 space group.

Stura, E.A., Tepshi, L., Mourier, G., Kessler, P., Servent, D.

(2016) J Biological Chem 291: 2616-2629

Released	2015-12-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Dendraspis polylepis polylepis
Macromolecule	Mambalgin-1 (protein)

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5DZ5 \| pdb_00005dz5	Download File View File

Crystal structure of Dendroaspis polylepis mambalgin-1 wild-type in P41212 space group

Stura, E.A., Tepshi, L., Mourier, G., Kessler, P., Servent, D.

(2016) J Biological Chem 291: 2616-2629

Released	2015-12-30
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Dendraspis polylepis polylepis
Macromolecule	Mambalgin-1 (protein)

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7CFT \| pdb_00007cft	Download File View File

Cryo-EM strucutre of human acid-sensing ion channel 1a in complex with snake toxin Mambalgin1 at pH 8.0

Sun, D.M., Liu, S.L., Li, S.Y., Yang, F., Tian, C.L.

(2020) Elife 9:

Released	2020-10-21
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Dendraspis polylepis polylepis Homo sapiens
Macromolecule	Acid-sensing ion channel 1 (protein) Mambalgin-1 (protein)
Unique Ligands	NAG

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7ULB \| pdb_00007ulb	Download File View File

recombinant Mambalgin-1

Xu, J., Lei, X., Chen, L.

To be published

Released	2023-05-03
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Dendraspis polylepis polylepis
Macromolecule	Mambalgin-1 (protein)
Unique Ligands	EPE

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7ULS \| pdb_00007uls	Download File View File

Recombinant muscarinic toxin alpha

Xu, J., Lei, X., Chen, L.

To be published

Released	2023-05-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Dendraspis polylepis polylepis
Macromolecule	Muscarinic toxin alpha (protein)
Unique Ligands	GOL

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8DA0 \| pdb_00008da0	Download File View File

Crystal structure of Mamba alpha-neurotoxin in complex with Centi-LNX-D09 antibody

Pletnev, S., Verardi, R., Tully, E.S., Glanville, J., Kwong, P.D.

To be published

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Dendraspis polylepis polylepis Homo sapiens
Macromolecule	Alpha-elapitoxin-Dpp2d (protein) Centi-LNX-D09 Fab heavy chain (protein) Centi-LNX-D09 Fab light chain (protein)
Unique Ligands	ACT, GOL, ZN

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8V13 \| pdb_00008v13	Download File View File

Crystal structure of Black mamba toxin in complex with Centi-SNX-B03 antibody

Pletnev, S., Glanville, J., Kwong, P.D.

To be published

Released	2025-01-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Dendraspis polylepis polylepis Homo sapiens
Macromolecule	Centi-SNX-B03 Fab heavy chain (protein) Centi-SNX-B03 Fab light chain (protein) Short neurotoxin 1 (protein)
Unique Ligands	NA

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8WE7 \| pdb_00008we7	Download File View File

Human L-type voltage-gated calcium channel Cav1.2 in the presence of calciseptine at 3.2 Angstrom resolution

Gao, S., Yao, X., Yan, N.

(2023) Cell 186: 5363-5374.e16

Released	2023-12-06
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Dendraspis polylepis polylepis Homo sapiens
Macromolecule	Calciseptin (protein) Voltage-dependent L-type calcium channel subunit alpha-1C (protein) Voltage-dependent L-type calcium channel subunit beta-3 (protein) Voltage-dependent calcium channel subunit alpha-2/delta-1 (protein)
Unique Ligands	CA, CLR, NAG
Unique branched monosaccharides	NAG

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8WE8 \| pdb_00008we8	Download File View File

Human L-type voltage-gated calcium channel Cav1.2 in the presence of calciseptine, amlodipine and pinaverium at 2.9 Angstrom resolution

Gao, S., Yao, X., Yan, N.

(2023) Cell 186: 5363-5374.e16

Released	2023-12-06
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Dendraspis polylepis polylepis Homo sapiens
Macromolecule	Calciseptin (protein) Voltage-dependent L-type calcium channel subunit alpha-1C (protein) Voltage-dependent L-type calcium channel subunit beta-3 (protein) Voltage-dependent calcium channel subunit alpha-2/delta-1 (protein)
Unique Ligands	3PE, 6UB, CA, CLR, NAG, PT5
Unique branched monosaccharides	NAG

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1DEM | pdb_00001dem

PROTEINASE INHIBITOR HOMOLOGUES AS POTASSIUM CHANNEL BLOCKERS

1DEN | pdb_00001den

PROTEINASE INHIBITOR HOMOLOGUES AS POTASSIUM CHANNEL BLOCKERS

1DTK | pdb_00001dtk

THE NMR SOLUTION STRUCTURE OF DENDROTOXIN K FROM THE VENOM OF DENDROASPIS POLYLEPIS POLYLEPIS

1IMT | pdb_00001imt

MAMBA INTESTINAL TOXIN 1, NMR, 39 STRUCTURES

1NTX | pdb_00001ntx

SECONDARY STRUCTURE DETERMINATION FOR ALPHA-NEUROTOXIN FROM DENDROASPIS POLYLEPIS POLYLEPIS BASED ON SEQUENCE SPECIFIC PROTON NUCLEAR MAGNETIC RESONANCE ASSIGNMENTS

1TFS | pdb_00001tfs

NMR AND RESTRAINED MOLECULAR DYNAMICS STUDY OF THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF TOXIN FS2, A SPECIFIC BLOCKER OF THE L-TYPE CALCIUM CHANNEL, ISOLATED FROM BLACK MAMBA VENOM

2MFA | pdb_00002mfa

Mambalgin-2

2MJY | pdb_00002mjy

Solution structure of synthetic Mamba-1 peptide

4LFT | pdb_00004lft

Structure of alpha-elapitoxin-Dpp2d isolated from Black Mamba (Dendroaspis polylepis) venom

5DO6 | pdb_00005do6

Crystal structure of Dendroaspis polylepis venom mambalgin-1 T23A mutant

5DU1 | pdb_00005du1

Crystal structure of Dendroaspis polylepis mambalgin-1 wild-type in P21 space group.

5DZ5 | pdb_00005dz5

Crystal structure of Dendroaspis polylepis mambalgin-1 wild-type in P41212 space group

7CFT | pdb_00007cft

Cryo-EM strucutre of human acid-sensing ion channel 1a in complex with snake toxin Mambalgin1 at pH 8.0

7ULB | pdb_00007ulb

recombinant Mambalgin-1

7ULS | pdb_00007uls

Recombinant muscarinic toxin alpha

8DA0 | pdb_00008da0

Crystal structure of Mamba alpha-neurotoxin in complex with Centi-LNX-D09 antibody

8V13 | pdb_00008v13

Crystal structure of Black mamba toxin in complex with Centi-SNX-B03 antibody

8WE7 | pdb_00008we7

Human L-type voltage-gated calcium channel Cav1.2 in the presence of calciseptine at 3.2 Angstrom resolution

8WE8 | pdb_00008we8

Human L-type voltage-gated calcium channel Cav1.2 in the presence of calciseptine, amlodipine and pinaverium at 2.9 Angstrom resolution

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

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Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

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SCOP Classification

1DEM | pdb_00001dem

1DEN | pdb_00001den

1DTK | pdb_00001dtk

1IMT | pdb_00001imt

1NTX | pdb_00001ntx

1TFS | pdb_00001tfs

2MFA | pdb_00002mfa

2MJY | pdb_00002mjy

4LFT | pdb_00004lft

5DO6 | pdb_00005do6

5DU1 | pdb_00005du1

5DZ5 | pdb_00005dz5

7CFT | pdb_00007cft

7ULB | pdb_00007ulb

7ULS | pdb_00007uls

8DA0 | pdb_00008da0

8V13 | pdb_00008v13

8WE7 | pdb_00008we7

8WE8 | pdb_00008we8