9B42

Pseudomonas phage Pa193 neck and extended tail (collar, gateway, tail tube, and sheath proteins)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-EM analysis of Pseudomonas phage Pa193 structural components.

Iglesias, S.M.Hou, C.D.Reid, J.Schauer, E.Geier, R.Soriaga, A.Sim, L.Gao, L.Whitelegge, J.Kyme, P.Birx, D.Lemire, S.Cingolani, G.

(2024) Commun Biol 7: 1275-1275

  • DOI: https://doi.org/10.1038/s42003-024-06985-x
  • Primary Citation of Related Structures:  
    9B40, 9B41, 9B42, 9B45

  • PubMed Abstract: 

    The World Health Organization has designated Pseudomonas aeruginosa as a critical pathogen for the development of new antimicrobials. Bacterial viruses, or bacteriophages, have been used in various clinical settings, commonly called phage therapy, to address this growing public health crisis. Here, we describe a high-resolution structural atlas of a therapeutic, contractile-tailed Pseudomonas phage, Pa193. We used bioinformatics, proteomics, and cryogenic electron microscopy single particle analysis to identify, annotate, and build atomic models for 21 distinct structural polypeptide chains forming the icosahedral capsid, neck, contractile tail, and baseplate. We identified a putative scaffolding protein stabilizing the interior of the capsid 5-fold vertex. We also visualized a large portion of Pa193 ~ 500 Å long tail fibers and resolved the interface between the baseplate and tail fibers. The work presented here provides a framework to support a better understanding of phages as biomedicines for phage therapy and inform engineering opportunities.


  • Organizational Affiliation

    Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
gp32 SheathA [auth S]504Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5P1KVA0 (Pseudomonas virus Pa193)
Explore A0A5P1KVA0 
Go to UniProtKB:  A0A5P1KVA0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5P1KVA0
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
gp29 Collar132Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5P1KV91 (Pseudomonas virus Pa193)
Explore A0A5P1KV91 
Go to UniProtKB:  A0A5P1KV91
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5P1KV91
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
gp33 Tail tube150Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5P1KYR7 (Pseudomonas virus Pa193)
Explore A0A5P1KYR7 
Go to UniProtKB:  A0A5P1KYR7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5P1KYR7
Sequence Annotations
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
gp30 Gateway183Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5P1KVE6 (Pseudomonas virus Pa193)
Explore A0A5P1KVE6 
Go to UniProtKB:  A0A5P1KVE6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5P1KVE6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION4.0
MODEL REFINEMENTPHENIX1.21

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesGM140733

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-16
    Type: Initial release