9B45

Pseudomonas phage Pa193 baseplate complex and tail fiber


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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Literature

Cryo-EM analysis of Pseudomonas phage Pa193 structural components.

Iglesias, S.M.Hou, C.D.Reid, J.Schauer, E.Geier, R.Soriaga, A.Sim, L.Gao, L.Whitelegge, J.Kyme, P.Birx, D.Lemire, S.Cingolani, G.

(2024) Commun Biol 7: 1275-1275

  • DOI: https://doi.org/10.1038/s42003-024-06985-x
  • Primary Citation of Related Structures:  
    9B40, 9B41, 9B42, 9B45

  • PubMed Abstract: 

    The World Health Organization has designated Pseudomonas aeruginosa as a critical pathogen for the development of new antimicrobials. Bacterial viruses, or bacteriophages, have been used in various clinical settings, commonly called phage therapy, to address this growing public health crisis. Here, we describe a high-resolution structural atlas of a therapeutic, contractile-tailed Pseudomonas phage, Pa193. We used bioinformatics, proteomics, and cryogenic electron microscopy single particle analysis to identify, annotate, and build atomic models for 21 distinct structural polypeptide chains forming the icosahedral capsid, neck, contractile tail, and baseplate. We identified a putative scaffolding protein stabilizing the interior of the capsid 5-fold vertex. We also visualized a large portion of Pa193 ~ 500 Å long tail fibers and resolved the interface between the baseplate and tail fibers. The work presented here provides a framework to support a better understanding of phages as biomedicines for phage therapy and inform engineering opportunities.


  • Organizational Affiliation

    Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
gp45-a Baseplate wedge 1417Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5P1KVA6 (Pseudomonas virus Pa193)
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UniProt GroupA0A5P1KVA6
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
gp47 Tail fiberG [auth 2],
H [auth 3],
I [auth 4]
962Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5P1KV60 (Pseudomonas virus Pa193)
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UniProt GroupA0A5P1KV60
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
gp34 helical bundle107Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5Q5ANU9 (Pseudomonas virus Pa193)
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UniProt GroupA0A5Q5ANU9
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
gp38 Ripcord-1P [auth S],
Q [auth T],
R [auth U]
180Pseudomonas virus Pa193Mutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
gp41 Tape measure proteinS [auth a],
T [auth b],
U [auth c]
858Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5P1KVB9 (Pseudomonas virus Pa193)
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UniProt GroupA0A5P1KVB9
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
gp42 Tail hubV [auth d],
W [auth e],
X [auth f]
287Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5P1KVA7 (Pseudomonas virus Pa193)
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UniProt GroupA0A5P1KVA7
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
gp39 Ripcord-2AA [auth X],
Y [auth V],
Z [auth W]
197Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5P1KV96 (Pseudomonas virus Pa193)
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UniProt GroupA0A5P1KV96
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
gp46 Baseplate wedge 2504Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5P1KVD4 (Pseudomonas virus Pa193)
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UniProt GroupA0A5P1KVD4
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
gp37 Baseplate tube167Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5P1KV51 (Pseudomonas virus Pa193)
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
gp35 Sheath initiator116Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5P1KV99 (Pseudomonas virus Pa193)
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UniProt GroupA0A5P1KV99
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
gp44 Tail tipAB [auth h],
BB [auth i],
ZA [auth g]
221Pseudomonas virus Pa193Mutation(s): 0 
UniProt
Find proteins for A0A5Q5ANV0 (Pseudomonas virus Pa193)
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UniProt GroupA0A5Q5ANV0
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION4.0
MODEL REFINEMENTPHENIX1.21

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesGM140733

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-16
    Type: Initial release